Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18580

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18580 and AZOBR_RS18585 overlap by 78 nucleotides AZOBR_RS18580: AZOBR_RS18580 - uroporphyrin-III methyltransferase, at 940,308 to 941,105 _RS18580 AZOBR_RS18585: AZOBR_RS18585 - peptidase, at 941,028 to 941,819 _RS18585 Position (kb) 940 941 942Strain fitness (log2 ratio) -3 -2 -1 0 1at 939.463 kb on - strandat 939.645 kb on - strandat 939.708 kb on - strandat 940.833 kb on + strand, within AZOBR_RS18580at 941.030 kb on - strandat 941.354 kb on - strand, within AZOBR_RS18585at 941.702 kb on + strand, within AZOBR_RS18585at 941.702 kb on + strand, within AZOBR_RS18585at 941.702 kb on + strand, within AZOBR_RS18585at 941.702 kb on + strand, within AZOBR_RS18585at 941.703 kb on - strand, within AZOBR_RS18585at 941.703 kb on - strand, within AZOBR_RS18585at 941.703 kb on - strand, within AZOBR_RS18585at 941.703 kb on - strand, within AZOBR_RS18585at 941.831 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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939,463 - -0.4
939,645 - -0.9
939,708 - -1.6
940,833 + AZOBR_RS18580 0.66 +0.0
941,030 - -2.3
941,354 - AZOBR_RS18585 0.41 +1.7
941,702 + AZOBR_RS18585 0.85 -2.5
941,702 + AZOBR_RS18585 0.85 +0.1
941,702 + AZOBR_RS18585 0.85 +0.5
941,702 + AZOBR_RS18585 0.85 -2.8
941,703 - AZOBR_RS18585 0.85 +1.2
941,703 - AZOBR_RS18585 0.85 -3.6
941,703 - AZOBR_RS18585 0.85 -0.1
941,703 - AZOBR_RS18585 0.85 +1.1
941,831 + -3.0

Or see this region's nucleotide sequence