Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16685

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16680 and AZOBR_RS16685 overlap by 4 nucleotidesAZOBR_RS16685 and AZOBR_RS16690 overlap by 11 nucleotides AZOBR_RS16680: AZOBR_RS16680 - cobaltochelatase, at 499,168 to 502,581 _RS16680 AZOBR_RS16685: AZOBR_RS16685 - precorrin-3B synthase, at 502,578 to 503,984 _RS16685 AZOBR_RS16690: AZOBR_RS16690 - precorrin-8X methylmutase, at 503,974 to 504,615 _RS16690 Position (kb) 502 503 504Strain fitness (log2 ratio) -3 -2 -1 0 1at 502.135 kb on + strand, within AZOBR_RS16680at 502.136 kb on - strand, within AZOBR_RS16680at 502.136 kb on - strand, within AZOBR_RS16680at 502.136 kb on - strand, within AZOBR_RS16680at 502.136 kb on - strand, within AZOBR_RS16680at 502.189 kb on + strand, within AZOBR_RS16680at 502.408 kb on + strandat 502.418 kb on - strandat 502.646 kb on + strandat 502.944 kb on + strand, within AZOBR_RS16685at 503.866 kb on - strandat 503.866 kb on - strandat 503.866 kb on - strandat 503.999 kb on - strandat 504.022 kb on + strandat 504.022 kb on + strandat 504.023 kb on - strandat 504.023 kb on - strandat 504.613 kb on + strandat 504.614 kb on - strandat 504.732 kb on + strandat 504.732 kb on + strandat 504.733 kb on - strandat 504.861 kb on - strandat 504.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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502,135 + AZOBR_RS16680 0.87 +1.2
502,136 - AZOBR_RS16680 0.87 -1.0
502,136 - AZOBR_RS16680 0.87 -0.4
502,136 - AZOBR_RS16680 0.87 -1.7
502,136 - AZOBR_RS16680 0.87 +1.6
502,189 + AZOBR_RS16680 0.88 -1.7
502,408 + +0.4
502,418 - -2.0
502,646 + -0.3
502,944 + AZOBR_RS16685 0.26 -1.2
503,866 - +0.5
503,866 - +0.9
503,866 - -1.2
503,999 - -2.5
504,022 + -1.3
504,022 + +1.0
504,023 - -1.8
504,023 - -0.8
504,613 + +0.1
504,614 - -3.3
504,732 + +0.9
504,732 + +0.2
504,733 - -3.7
504,861 - -2.5
504,861 - +1.5

Or see this region's nucleotide sequence