Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15635

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS15630 and AZOBR_RS15635 are separated by 415 nucleotidesAZOBR_RS15635 and AZOBR_RS15640 are separated by 162 nucleotides AZOBR_RS15630: AZOBR_RS15630 - hypothetical protein, at 263,230 to 263,463 _RS15630 AZOBR_RS15635: AZOBR_RS15635 - hypothetical protein, at 263,879 to 264,283 _RS15635 AZOBR_RS15640: AZOBR_RS15640 - membrane protein, at 264,446 to 265,195 _RS15640 Position (kb) 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1at 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 263.200 kb on + strandat 263.830 kb on + strandat 264.113 kb on + strand, within AZOBR_RS15635at 264.412 kb on - strandat 264.500 kb on + strandat 264.501 kb on - strandat 264.669 kb on - strand, within AZOBR_RS15640at 264.737 kb on + strand, within AZOBR_RS15640at 264.738 kb on - strand, within AZOBR_RS15640at 264.986 kb on + strand, within AZOBR_RS15640at 264.987 kb on - strand, within AZOBR_RS15640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
262,942 - +1.4
262,942 - -0.3
262,942 - -1.5
262,942 - -1.5
262,942 - -1.1
262,942 - +0.1
263,200 + -1.9
263,830 + -2.8
264,113 + AZOBR_RS15635 0.58 +0.2
264,412 - -0.3
264,500 + +0.6
264,501 - +0.1
264,669 - AZOBR_RS15640 0.30 +0.1
264,737 + AZOBR_RS15640 0.39 -1.1
264,738 - AZOBR_RS15640 0.39 -1.8
264,986 + AZOBR_RS15640 0.72 -0.6
264,987 - AZOBR_RS15640 0.72 -0.9

Or see this region's nucleotide sequence