Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11080

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11080 and AZOBR_RS11085 are separated by 116 nucleotidesAZOBR_RS11085 and AZOBR_RS11090 are separated by 104 nucleotides AZOBR_RS11080: AZOBR_RS11080 - ATPase AAA, at 2,331,448 to 2,332,293 _RS11080 AZOBR_RS11085: AZOBR_RS11085 - hypothetical protein, at 2,332,410 to 2,332,727 _RS11085 AZOBR_RS11090: AZOBR_RS11090 - alanyl-tRNA synthetase, at 2,332,832 to 2,335,501 _RS11090 Position (kb) 2331 2332 2333Strain fitness (log2 ratio) -2 -1 0 1 2at 2330.460 kb on + strandat 2330.745 kb on + strandat 2331.270 kb on + strandat 2331.270 kb on + strandat 2331.271 kb on - strandat 2331.338 kb on - strandat 2331.427 kb on + strandat 2331.668 kb on + strand, within AZOBR_RS11080at 2331.668 kb on + strand, within AZOBR_RS11080at 2331.669 kb on - strand, within AZOBR_RS11080at 2331.716 kb on + strand, within AZOBR_RS11080at 2331.717 kb on - strand, within AZOBR_RS11080at 2331.767 kb on + strand, within AZOBR_RS11080at 2331.767 kb on + strand, within AZOBR_RS11080at 2331.875 kb on + strand, within AZOBR_RS11080at 2331.875 kb on + strand, within AZOBR_RS11080at 2331.875 kb on + strand, within AZOBR_RS11080at 2331.876 kb on - strand, within AZOBR_RS11080at 2332.013 kb on + strand, within AZOBR_RS11080at 2332.013 kb on + strand, within AZOBR_RS11080at 2332.013 kb on + strand, within AZOBR_RS11080at 2332.013 kb on + strand, within AZOBR_RS11080at 2332.013 kb on + strand, within AZOBR_RS11080at 2332.014 kb on - strand, within AZOBR_RS11080at 2332.014 kb on - strand, within AZOBR_RS11080at 2332.014 kb on - strand, within AZOBR_RS11080at 2332.014 kb on - strand, within AZOBR_RS11080at 2332.014 kb on - strand, within AZOBR_RS11080at 2332.080 kb on - strand, within AZOBR_RS11080at 2332.086 kb on - strand, within AZOBR_RS11080at 2332.268 kb on + strandat 2332.268 kb on + strandat 2332.268 kb on + strandat 2332.268 kb on + strandat 2332.742 kb on + strandat 2332.742 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,330,460 + +0.7
2,330,745 + -1.6
2,331,270 + -0.1
2,331,270 + +1.3
2,331,271 - -1.7
2,331,338 - -2.0
2,331,427 + +0.9
2,331,668 + AZOBR_RS11080 0.26 -0.9
2,331,668 + AZOBR_RS11080 0.26 +0.7
2,331,669 - AZOBR_RS11080 0.26 -0.3
2,331,716 + AZOBR_RS11080 0.32 -0.4
2,331,717 - AZOBR_RS11080 0.32 +1.5
2,331,767 + AZOBR_RS11080 0.38 +0.1
2,331,767 + AZOBR_RS11080 0.38 +2.4
2,331,875 + AZOBR_RS11080 0.50 +1.0
2,331,875 + AZOBR_RS11080 0.50 -1.6
2,331,875 + AZOBR_RS11080 0.50 +0.1
2,331,876 - AZOBR_RS11080 0.51 +0.9
2,332,013 + AZOBR_RS11080 0.67 +0.7
2,332,013 + AZOBR_RS11080 0.67 -0.2
2,332,013 + AZOBR_RS11080 0.67 +0.5
2,332,013 + AZOBR_RS11080 0.67 +0.1
2,332,013 + AZOBR_RS11080 0.67 -2.0
2,332,014 - AZOBR_RS11080 0.67 -0.5
2,332,014 - AZOBR_RS11080 0.67 +0.3
2,332,014 - AZOBR_RS11080 0.67 +0.4
2,332,014 - AZOBR_RS11080 0.67 -1.3
2,332,014 - AZOBR_RS11080 0.67 +0.8
2,332,080 - AZOBR_RS11080 0.75 +0.2
2,332,086 - AZOBR_RS11080 0.75 +0.8
2,332,268 + +0.7
2,332,268 + -0.1
2,332,268 + +0.4
2,332,268 + -1.8
2,332,742 + -1.9
2,332,742 + -0.1

Or see this region's nucleotide sequence