Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09880

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09870 and AZOBR_RS09875 are separated by 11 nucleotidesAZOBR_RS09875 and AZOBR_RS09880 overlap by 29 nucleotidesAZOBR_RS09880 and AZOBR_RS09885 are separated by 201 nucleotidesAZOBR_RS09885 and AZOBR_RS09890 are separated by 24 nucleotides AZOBR_RS09870: AZOBR_RS09870 - chalcone synthase, at 2,068,444 to 2,069,493 _RS09870 AZOBR_RS09875: AZOBR_RS09875 - membrane protein, at 2,069,505 to 2,070,044 _RS09875 AZOBR_RS09880: AZOBR_RS09880 - hypothetical protein, at 2,070,016 to 2,070,390 _RS09880 AZOBR_RS09885: AZOBR_RS09885 - Crp/Fnr family transcriptional regulator, at 2,070,592 to 2,071,299 _RS09885 AZOBR_RS09890: AZOBR_RS09890 - hypothetical protein, at 2,071,324 to 2,071,737 _RS09890 Position (kb) 2070 2071Strain fitness (log2 ratio) -2 -1 0 1 2at 2069.492 kb on - strandat 2069.644 kb on - strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.871 kb on + strand, within AZOBR_RS09875at 2069.872 kb on - strand, within AZOBR_RS09875at 2069.872 kb on - strand, within AZOBR_RS09875at 2070.216 kb on - strand, within AZOBR_RS09880at 2070.245 kb on + strand, within AZOBR_RS09880at 2070.245 kb on + strand, within AZOBR_RS09880at 2070.245 kb on + strand, within AZOBR_RS09880at 2070.245 kb on + strand, within AZOBR_RS09880at 2070.246 kb on - strand, within AZOBR_RS09880at 2070.246 kb on - strand, within AZOBR_RS09880at 2070.246 kb on - strand, within AZOBR_RS09880at 2070.381 kb on - strandat 2070.542 kb on + strandat 2071.322 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,069,492 - +2.1
2,069,644 - AZOBR_RS09875 0.26 -1.4
2,069,871 + AZOBR_RS09875 0.68 +1.1
2,069,871 + AZOBR_RS09875 0.68 -1.4
2,069,871 + AZOBR_RS09875 0.68 +0.5
2,069,871 + AZOBR_RS09875 0.68 +1.8
2,069,871 + AZOBR_RS09875 0.68 -2.1
2,069,871 + AZOBR_RS09875 0.68 +0.7
2,069,872 - AZOBR_RS09875 0.68 +0.6
2,069,872 - AZOBR_RS09875 0.68 +1.6
2,070,216 - AZOBR_RS09880 0.53 +0.7
2,070,245 + AZOBR_RS09880 0.61 -2.2
2,070,245 + AZOBR_RS09880 0.61 -1.6
2,070,245 + AZOBR_RS09880 0.61 -1.2
2,070,245 + AZOBR_RS09880 0.61 +1.8
2,070,246 - AZOBR_RS09880 0.61 -0.4
2,070,246 - AZOBR_RS09880 0.61 +0.9
2,070,246 - AZOBR_RS09880 0.61 -2.6
2,070,381 - +0.5
2,070,542 + -0.2
2,071,322 + -1.1

Or see this region's nucleotide sequence