Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06175

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06165 and AZOBR_RS06170 overlap by 17 nucleotidesAZOBR_RS06170 and AZOBR_RS06175 are separated by 216 nucleotidesAZOBR_RS06175 and AZOBR_RS06180 overlap by 17 nucleotides AZOBR_RS06165: AZOBR_RS06165 - GCN5 family N-acetyltransferase, at 1,306,422 to 1,307,009 _RS06165 AZOBR_RS06170: AZOBR_RS06170 - hypothetical protein, at 1,306,993 to 1,307,385 _RS06170 AZOBR_RS06175: AZOBR_RS06175 - hypothetical protein, at 1,307,602 to 1,309,398 _RS06175 AZOBR_RS06180: AZOBR_RS06180 - flgE (modular protein), at 1,309,382 to 1,310,752 _RS06180 Position (kb) 1307 1308 1309 1310Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1306.706 kb on - strand, within AZOBR_RS06165at 1306.706 kb on - strand, within AZOBR_RS06165at 1306.940 kb on + strand, within AZOBR_RS06165at 1306.941 kb on - strand, within AZOBR_RS06165at 1307.060 kb on - strand, within AZOBR_RS06170at 1307.061 kb on - strand, within AZOBR_RS06170at 1307.061 kb on - strand, within AZOBR_RS06170at 1307.061 kb on - strand, within AZOBR_RS06170at 1307.167 kb on + strand, within AZOBR_RS06170at 1307.430 kb on + strandat 1307.465 kb on - strandat 1308.220 kb on + strand, within AZOBR_RS06175at 1308.641 kb on - strand, within AZOBR_RS06175at 1308.788 kb on + strand, within AZOBR_RS06175at 1308.789 kb on - strand, within AZOBR_RS06175at 1308.844 kb on + strand, within AZOBR_RS06175at 1308.844 kb on + strand, within AZOBR_RS06175at 1308.845 kb on - strand, within AZOBR_RS06175at 1308.845 kb on - strand, within AZOBR_RS06175at 1308.845 kb on - strand, within AZOBR_RS06175at 1308.845 kb on - strand, within AZOBR_RS06175at 1308.845 kb on - strand, within AZOBR_RS06175at 1309.383 kb on + strandat 1309.453 kb on - strandat 1309.692 kb on + strand, within AZOBR_RS06180at 1309.693 kb on - strand, within AZOBR_RS06180at 1309.698 kb on + strand, within AZOBR_RS06180at 1309.699 kb on - strand, within AZOBR_RS06180at 1309.764 kb on + strand, within AZOBR_RS06180at 1309.764 kb on + strand, within AZOBR_RS06180at 1309.764 kb on + strand, within AZOBR_RS06180at 1309.765 kb on - strand, within AZOBR_RS06180at 1309.765 kb on - strand, within AZOBR_RS06180at 1309.765 kb on - strand, within AZOBR_RS06180

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,306,706 - AZOBR_RS06165 0.48 -0.1
1,306,706 - AZOBR_RS06165 0.48 -0.4
1,306,940 + AZOBR_RS06165 0.88 +1.1
1,306,941 - AZOBR_RS06165 0.88 -0.5
1,307,060 - AZOBR_RS06170 0.17 +3.0
1,307,061 - AZOBR_RS06170 0.17 -1.4
1,307,061 - AZOBR_RS06170 0.17 -2.0
1,307,061 - AZOBR_RS06170 0.17 +0.1
1,307,167 + AZOBR_RS06170 0.44 +1.3
1,307,430 + +0.4
1,307,465 - -2.7
1,308,220 + AZOBR_RS06175 0.34 +0.4
1,308,641 - AZOBR_RS06175 0.58 +3.5
1,308,788 + AZOBR_RS06175 0.66 +0.3
1,308,789 - AZOBR_RS06175 0.66 +0.5
1,308,844 + AZOBR_RS06175 0.69 +0.4
1,308,844 + AZOBR_RS06175 0.69 +0.1
1,308,845 - AZOBR_RS06175 0.69 +1.4
1,308,845 - AZOBR_RS06175 0.69 -2.8
1,308,845 - AZOBR_RS06175 0.69 +2.0
1,308,845 - AZOBR_RS06175 0.69 -2.7
1,308,845 - AZOBR_RS06175 0.69 -0.5
1,309,383 + +0.8
1,309,453 - -0.0
1,309,692 + AZOBR_RS06180 0.23 +0.3
1,309,693 - AZOBR_RS06180 0.23 +1.5
1,309,698 + AZOBR_RS06180 0.23 +0.7
1,309,699 - AZOBR_RS06180 0.23 +1.8
1,309,764 + AZOBR_RS06180 0.28 -1.6
1,309,764 + AZOBR_RS06180 0.28 +0.1
1,309,764 + AZOBR_RS06180 0.28 -1.6
1,309,765 - AZOBR_RS06180 0.28 -0.1
1,309,765 - AZOBR_RS06180 0.28 -0.5
1,309,765 - AZOBR_RS06180 0.28 -0.0

Or see this region's nucleotide sequence