Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00600

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00600 and AZOBR_RS00605 are separated by 283 nucleotides AZOBR_RS00600: AZOBR_RS00600 - thioredoxin, at 123,988 to 124,311 _RS00600 AZOBR_RS00605: AZOBR_RS00605 - transcriptional Regulator LysR family; putative Glycine cleavage system transcriptional activator (Gcv operon activator), at 124,595 to 125,491 _RS00605 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1at 123.660 kb on + strandat 123.788 kb on + strandat 123.978 kb on + strandat 124.382 kb on + strandat 124.382 kb on + strandat 124.800 kb on - strand, within AZOBR_RS00605at 124.800 kb on - strand, within AZOBR_RS00605at 124.800 kb on - strand, within AZOBR_RS00605

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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123,660 + +0.8
123,788 + -1.6
123,978 + -1.5
124,382 + +1.4
124,382 + +0.4
124,800 - AZOBR_RS00605 0.23 -2.5
124,800 - AZOBR_RS00605 0.23 +0.7
124,800 - AZOBR_RS00605 0.23 +1.5

Or see this region's nucleotide sequence