Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28510

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28505 and AO353_28510 are separated by 307 nucleotidesAO353_28510 and AO353_28515 are separated by 336 nucleotides AO353_28505: AO353_28505 - glutathione S-transferase, at 6,210,819 to 6,211,499 _28505 AO353_28510: AO353_28510 - hypothetical protein, at 6,211,807 to 6,212,262 _28510 AO353_28515: AO353_28515 - malate:quinone oxidoreductase, at 6,212,599 to 6,214,248 _28515 Position (kb) 6211 6212 6213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6210.834 kb on + strandat 6210.834 kb on + strandat 6210.835 kb on - strandat 6210.837 kb on + strandat 6210.837 kb on + strandat 6210.837 kb on + strandat 6210.838 kb on - strandat 6210.838 kb on - strandat 6210.838 kb on - strandat 6210.838 kb on - strandat 6210.855 kb on + strandat 6210.883 kb on - strandat 6210.883 kb on - strandat 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.134 kb on + strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.135 kb on - strand, within AO353_28505at 6211.137 kb on - strand, within AO353_28505at 6211.227 kb on + strand, within AO353_28505at 6211.227 kb on + strand, within AO353_28505at 6211.228 kb on - strand, within AO353_28505at 6211.228 kb on - strand, within AO353_28505at 6211.228 kb on - strand, within AO353_28505at 6211.228 kb on - strand, within AO353_28505at 6211.320 kb on + strand, within AO353_28505at 6211.321 kb on - strand, within AO353_28505at 6211.372 kb on - strand, within AO353_28505at 6211.372 kb on - strand, within AO353_28505at 6211.431 kb on + strand, within AO353_28505at 6211.432 kb on - strandat 6211.508 kb on + strandat 6211.509 kb on - strandat 6211.509 kb on - strandat 6211.537 kb on + strandat 6211.537 kb on + strandat 6211.537 kb on + strandat 6211.538 kb on - strandat 6211.538 kb on - strandat 6211.563 kb on + strandat 6211.563 kb on + strandat 6211.563 kb on + strandat 6211.564 kb on - strandat 6211.564 kb on - strandat 6211.564 kb on - strandat 6211.564 kb on - strandat 6211.564 kb on - strandat 6211.569 kb on - strandat 6211.569 kb on - strandat 6211.569 kb on - strandat 6211.585 kb on + strandat 6211.586 kb on - strandat 6211.586 kb on - strandat 6211.586 kb on - strandat 6211.605 kb on + strandat 6211.605 kb on + strandat 6211.605 kb on + strandat 6211.606 kb on - strandat 6211.606 kb on - strandat 6211.606 kb on - strandat 6211.677 kb on - strandat 6211.677 kb on - strandat 6211.677 kb on - strandat 6211.749 kb on + strandat 6211.749 kb on + strandat 6211.750 kb on - strandat 6211.750 kb on - strandat 6211.750 kb on - strandat 6211.750 kb on - strandat 6211.844 kb on + strandat 6211.844 kb on + strandat 6211.844 kb on + strandat 6211.845 kb on - strandat 6211.845 kb on - strandat 6211.845 kb on - strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.848 kb on + strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.849 kb on - strandat 6211.904 kb on + strandat 6211.904 kb on + strandat 6211.905 kb on - strand, within AO353_28510at 6211.905 kb on - strand, within AO353_28510at 6211.905 kb on - strand, within AO353_28510at 6211.973 kb on + strand, within AO353_28510at 6211.974 kb on - strand, within AO353_28510at 6212.039 kb on + strand, within AO353_28510at 6212.040 kb on - strand, within AO353_28510at 6212.040 kb on - strand, within AO353_28510at 6212.040 kb on - strand, within AO353_28510at 6212.040 kb on - strand, within AO353_28510at 6212.040 kb on - strand, within AO353_28510at 6212.040 kb on - strand, within AO353_28510at 6212.052 kb on + strand, within AO353_28510at 6212.053 kb on - strand, within AO353_28510at 6212.092 kb on - strand, within AO353_28510at 6212.092 kb on - strand, within AO353_28510at 6212.092 kb on - strand, within AO353_28510at 6212.105 kb on + strand, within AO353_28510at 6212.105 kb on + strand, within AO353_28510at 6212.105 kb on + strand, within AO353_28510at 6212.131 kb on + strand, within AO353_28510at 6212.132 kb on - strand, within AO353_28510at 6212.136 kb on + strand, within AO353_28510at 6212.144 kb on + strand, within AO353_28510at 6212.144 kb on + strand, within AO353_28510at 6212.144 kb on + strand, within AO353_28510at 6212.145 kb on - strand, within AO353_28510at 6212.156 kb on + strand, within AO353_28510at 6212.156 kb on + strand, within AO353_28510at 6212.156 kb on + strand, within AO353_28510at 6212.157 kb on - strand, within AO353_28510at 6212.160 kb on + strand, within AO353_28510at 6212.160 kb on + strand, within AO353_28510at 6212.160 kb on + strand, within AO353_28510at 6212.161 kb on - strand, within AO353_28510at 6212.161 kb on - strand, within AO353_28510at 6212.161 kb on - strand, within AO353_28510at 6212.161 kb on - strand, within AO353_28510at 6212.161 kb on - strand, within AO353_28510at 6212.208 kb on + strand, within AO353_28510at 6212.208 kb on + strand, within AO353_28510at 6212.208 kb on + strand, within AO353_28510at 6212.208 kb on + strand, within AO353_28510at 6212.208 kb on + strand, within AO353_28510at 6212.208 kb on + strand, within AO353_28510at 6212.209 kb on - strand, within AO353_28510at 6212.209 kb on - strand, within AO353_28510at 6212.209 kb on - strand, within AO353_28510at 6212.209 kb on - strand, within AO353_28510at 6212.209 kb on - strand, within AO353_28510at 6212.209 kb on - strand, within AO353_28510at 6212.209 kb on - strand, within AO353_28510at 6212.209 kb on - strand, within AO353_28510at 6212.209 kb on - strand, within AO353_28510at 6212.209 kb on - strand, within AO353_28510at 6212.209 kb on - strand, within AO353_28510at 6212.236 kb on + strandat 6212.251 kb on + strandat 6212.251 kb on + strandat 6212.251 kb on + strandat 6212.251 kb on + strandat 6212.252 kb on - strandat 6212.252 kb on - strandat 6212.255 kb on + strandat 6212.255 kb on + strandat 6212.256 kb on - strandat 6212.299 kb on + strandat 6212.299 kb on + strandat 6212.299 kb on + strandat 6212.299 kb on + strandat 6212.299 kb on + strandat 6212.299 kb on + strandat 6212.299 kb on + strandat 6212.299 kb on + strandat 6212.299 kb on + strandat 6212.299 kb on + strandat 6212.300 kb on - strandat 6212.300 kb on - strandat 6212.300 kb on - strandat 6212.323 kb on + strandat 6212.324 kb on - strandat 6212.324 kb on - strandat 6212.324 kb on - strandat 6212.335 kb on + strandat 6212.335 kb on + strandat 6212.336 kb on - strandat 6212.336 kb on - strandat 6212.369 kb on + strandat 6212.369 kb on + strandat 6212.369 kb on + strandat 6212.370 kb on - strandat 6212.370 kb on - strandat 6212.370 kb on - strandat 6212.415 kb on + strandat 6212.415 kb on + strandat 6212.415 kb on + strandat 6212.415 kb on + strandat 6212.415 kb on + strandat 6212.416 kb on - strandat 6212.416 kb on - strandat 6212.416 kb on - strandat 6212.416 kb on - strandat 6212.416 kb on - strandat 6212.425 kb on + strandat 6212.425 kb on + strandat 6212.425 kb on + strandat 6212.425 kb on + strandat 6212.425 kb on + strandat 6212.425 kb on + strandat 6212.426 kb on - strandat 6212.426 kb on - strandat 6212.430 kb on - strandat 6212.430 kb on - strandat 6212.436 kb on - strandat 6212.472 kb on - strandat 6212.472 kb on - strandat 6212.492 kb on + strandat 6212.492 kb on + strandat 6212.492 kb on + strandat 6212.493 kb on - strandat 6212.493 kb on - strandat 6212.726 kb on + strandat 6212.726 kb on + strandat 6212.727 kb on - strandat 6212.727 kb on - strandat 6212.741 kb on + strandat 6212.777 kb on + strand, within AO353_28515at 6213.047 kb on + strand, within AO353_28515at 6213.048 kb on - strand, within AO353_28515at 6213.104 kb on + strand, within AO353_28515at 6213.105 kb on - strand, within AO353_28515at 6213.188 kb on + strand, within AO353_28515at 6213.188 kb on + strand, within AO353_28515at 6213.188 kb on + strand, within AO353_28515at 6213.189 kb on - strand, within AO353_28515at 6213.189 kb on - strand, within AO353_28515

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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6,210,834 + +0.4
6,210,834 + -0.6
6,210,835 - -0.7
6,210,837 + -0.2
6,210,837 + -0.6
6,210,837 + +1.4
6,210,838 - +1.0
6,210,838 - +0.0
6,210,838 - -0.0
6,210,838 - +0.6
6,210,855 + -0.2
6,210,883 - +0.9
6,210,883 - -0.6
6,211,134 + AO353_28505 0.46 -0.6
6,211,134 + AO353_28505 0.46 -0.9
6,211,134 + AO353_28505 0.46 +0.2
6,211,134 + AO353_28505 0.46 -0.3
6,211,134 + AO353_28505 0.46 +0.9
6,211,134 + AO353_28505 0.46 +0.5
6,211,134 + AO353_28505 0.46 -0.3
6,211,134 + AO353_28505 0.46 -0.4
6,211,134 + AO353_28505 0.46 -0.1
6,211,134 + AO353_28505 0.46 -1.2
6,211,134 + AO353_28505 0.46 -0.6
6,211,134 + AO353_28505 0.46 -0.8
6,211,134 + AO353_28505 0.46 +0.4
6,211,134 + AO353_28505 0.46 +0.2
6,211,134 + AO353_28505 0.46 +0.9
6,211,134 + AO353_28505 0.46 +0.1
6,211,134 + AO353_28505 0.46 -1.4
6,211,134 + AO353_28505 0.46 -1.2
6,211,134 + AO353_28505 0.46 -0.4
6,211,134 + AO353_28505 0.46 +1.1
6,211,134 + AO353_28505 0.46 -0.5
6,211,135 - AO353_28505 0.46 -1.4
6,211,135 - AO353_28505 0.46 +0.4
6,211,135 - AO353_28505 0.46 +0.7
6,211,135 - AO353_28505 0.46 -0.7
6,211,135 - AO353_28505 0.46 -0.3
6,211,135 - AO353_28505 0.46 +0.6
6,211,135 - AO353_28505 0.46 -0.8
6,211,135 - AO353_28505 0.46 +0.2
6,211,135 - AO353_28505 0.46 +0.1
6,211,135 - AO353_28505 0.46 +0.3
6,211,135 - AO353_28505 0.46 +2.2
6,211,135 - AO353_28505 0.46 -0.6
6,211,135 - AO353_28505 0.46 -0.0
6,211,135 - AO353_28505 0.46 -0.0
6,211,135 - AO353_28505 0.46 -1.4
6,211,135 - AO353_28505 0.46 -0.9
6,211,135 - AO353_28505 0.46 -0.8
6,211,135 - AO353_28505 0.46 -1.6
6,211,137 - AO353_28505 0.47 +0.4
6,211,227 + AO353_28505 0.60 +0.2
6,211,227 + AO353_28505 0.60 -0.7
6,211,228 - AO353_28505 0.60 +1.8
6,211,228 - AO353_28505 0.60 +0.6
6,211,228 - AO353_28505 0.60 +1.2
6,211,228 - AO353_28505 0.60 +1.1
6,211,320 + AO353_28505 0.74 -0.6
6,211,321 - AO353_28505 0.74 +0.8
6,211,372 - AO353_28505 0.81 +0.3
6,211,372 - AO353_28505 0.81 +0.9
6,211,431 + AO353_28505 0.90 -0.2
6,211,432 - +2.2
6,211,508 + -1.0
6,211,509 - +0.2
6,211,509 - +0.5
6,211,537 + -0.6
6,211,537 + -1.6
6,211,537 + +0.7
6,211,538 - -1.1
6,211,538 - +1.2
6,211,563 + -0.5
6,211,563 + +0.7
6,211,563 + +0.2
6,211,564 - +0.4
6,211,564 - +1.2
6,211,564 - -0.8
6,211,564 - +0.4
6,211,564 - +0.5
6,211,569 - +0.9
6,211,569 - +1.0
6,211,569 - +0.0
6,211,585 + -0.3
6,211,586 - -0.2
6,211,586 - +0.0
6,211,586 - -0.4
6,211,605 + +1.7
6,211,605 + -0.5
6,211,605 + +0.4
6,211,606 - +0.3
6,211,606 - -1.2
6,211,606 - -0.2
6,211,677 - +0.7
6,211,677 - -0.8
6,211,677 - +0.4
6,211,749 + +0.8
6,211,749 + -0.8
6,211,750 - +0.2
6,211,750 - -0.4
6,211,750 - -0.3
6,211,750 - +0.5
6,211,844 + +1.5
6,211,844 + -0.3
6,211,844 + -0.8
6,211,845 - -0.6
6,211,845 - -0.1
6,211,845 - +0.9
6,211,848 + +1.2
6,211,848 + +0.4
6,211,848 + -1.5
6,211,848 + +1.0
6,211,848 + -0.4
6,211,848 + +0.7
6,211,848 + -1.0
6,211,848 + -1.5
6,211,848 + +0.6
6,211,848 + +2.7
6,211,848 + +0.4
6,211,848 + +0.4
6,211,848 + -1.3
6,211,848 + +0.2
6,211,848 + -0.7
6,211,848 + +0.9
6,211,849 - +1.6
6,211,849 - -0.6
6,211,849 - +0.6
6,211,849 - +0.7
6,211,849 - -0.5
6,211,849 - +2.0
6,211,849 - -1.6
6,211,849 - -0.9
6,211,849 - +1.1
6,211,849 - -1.0
6,211,849 - -0.8
6,211,849 - -1.3
6,211,849 - -1.8
6,211,904 + -0.2
6,211,904 + -0.9
6,211,905 - AO353_28510 0.21 -0.9
6,211,905 - AO353_28510 0.21 -0.2
6,211,905 - AO353_28510 0.21 -0.0
6,211,973 + AO353_28510 0.36 +0.1
6,211,974 - AO353_28510 0.37 +0.1
6,212,039 + AO353_28510 0.51 -2.0
6,212,040 - AO353_28510 0.51 -0.3
6,212,040 - AO353_28510 0.51 -0.4
6,212,040 - AO353_28510 0.51 +2.6
6,212,040 - AO353_28510 0.51 -0.6
6,212,040 - AO353_28510 0.51 -0.6
6,212,040 - AO353_28510 0.51 -0.6
6,212,052 + AO353_28510 0.54 +0.6
6,212,053 - AO353_28510 0.54 -0.4
6,212,092 - AO353_28510 0.62 +0.4
6,212,092 - AO353_28510 0.62 +1.3
6,212,092 - AO353_28510 0.62 +0.2
6,212,105 + AO353_28510 0.65 -0.2
6,212,105 + AO353_28510 0.65 +0.7
6,212,105 + AO353_28510 0.65 +1.3
6,212,131 + AO353_28510 0.71 -0.6
6,212,132 - AO353_28510 0.71 +0.2
6,212,136 + AO353_28510 0.72 -0.6
6,212,144 + AO353_28510 0.74 -1.4
6,212,144 + AO353_28510 0.74 +0.4
6,212,144 + AO353_28510 0.74 -0.4
6,212,145 - AO353_28510 0.74 -0.3
6,212,156 + AO353_28510 0.77 -3.0
6,212,156 + AO353_28510 0.77 -0.1
6,212,156 + AO353_28510 0.77 +0.9
6,212,157 - AO353_28510 0.77 +1.4
6,212,160 + AO353_28510 0.77 -0.4
6,212,160 + AO353_28510 0.77 +0.3
6,212,160 + AO353_28510 0.77 +2.0
6,212,161 - AO353_28510 0.78 -0.9
6,212,161 - AO353_28510 0.78 +0.5
6,212,161 - AO353_28510 0.78 -1.2
6,212,161 - AO353_28510 0.78 +1.4
6,212,161 - AO353_28510 0.78 +0.6
6,212,208 + AO353_28510 0.88 +1.8
6,212,208 + AO353_28510 0.88 -0.0
6,212,208 + AO353_28510 0.88 -0.0
6,212,208 + AO353_28510 0.88 -0.4
6,212,208 + AO353_28510 0.88 +0.5
6,212,208 + AO353_28510 0.88 -0.5
6,212,209 - AO353_28510 0.88 +0.7
6,212,209 - AO353_28510 0.88 -0.8
6,212,209 - AO353_28510 0.88 +0.2
6,212,209 - AO353_28510 0.88 +1.0
6,212,209 - AO353_28510 0.88 -0.1
6,212,209 - AO353_28510 0.88 -0.0
6,212,209 - AO353_28510 0.88 +0.4
6,212,209 - AO353_28510 0.88 -0.0
6,212,209 - AO353_28510 0.88 +0.2
6,212,209 - AO353_28510 0.88 +1.4
6,212,209 - AO353_28510 0.88 +1.1
6,212,236 + -0.2
6,212,251 + +1.6
6,212,251 + -0.2
6,212,251 + -0.0
6,212,251 + -1.2
6,212,252 - -1.0
6,212,252 - -1.2
6,212,255 + -0.2
6,212,255 + -0.4
6,212,256 - +1.0
6,212,299 + +0.3
6,212,299 + +0.1
6,212,299 + +0.9
6,212,299 + -0.2
6,212,299 + -0.5
6,212,299 + +0.4
6,212,299 + -0.5
6,212,299 + -0.2
6,212,299 + +1.0
6,212,299 + -1.0
6,212,300 - -0.2
6,212,300 - -0.0
6,212,300 - +2.7
6,212,323 + -0.4
6,212,324 - -1.0
6,212,324 - -1.9
6,212,324 - -0.7
6,212,335 + +1.4
6,212,335 + -1.2
6,212,336 - -1.4
6,212,336 - +1.4
6,212,369 + -2.0
6,212,369 + -0.3
6,212,369 + +1.6
6,212,370 - -0.5
6,212,370 - -0.6
6,212,370 - -1.8
6,212,415 + -0.0
6,212,415 + -1.3
6,212,415 + -1.4
6,212,415 + +0.7
6,212,415 + +0.8
6,212,416 - +0.4
6,212,416 - +0.8
6,212,416 - +0.4
6,212,416 - +0.1
6,212,416 - +0.4
6,212,425 + +1.7
6,212,425 + -1.4
6,212,425 + -2.3
6,212,425 + -1.4
6,212,425 + -0.5
6,212,425 + -1.2
6,212,426 - -0.3
6,212,426 - -1.2
6,212,430 - +0.5
6,212,430 - +0.5
6,212,436 - -1.9
6,212,472 - -0.0
6,212,472 - -0.1
6,212,492 + +1.8
6,212,492 + -0.2
6,212,492 + -0.8
6,212,493 - -0.2
6,212,493 - -0.4
6,212,726 + -1.5
6,212,726 + +0.9
6,212,727 - -1.6
6,212,727 - +0.4
6,212,741 + -0.9
6,212,777 + AO353_28515 0.11 -0.0
6,213,047 + AO353_28515 0.27 +0.9
6,213,048 - AO353_28515 0.27 -1.8
6,213,104 + AO353_28515 0.31 -0.9
6,213,105 - AO353_28515 0.31 -0.6
6,213,188 + AO353_28515 0.36 -0.3
6,213,188 + AO353_28515 0.36 -1.2
6,213,188 + AO353_28515 0.36 -0.0
6,213,189 - AO353_28515 0.36 -0.3
6,213,189 - AO353_28515 0.36 -0.4

Or see this region's nucleotide sequence