Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26970

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26960 and AO353_26965 are separated by 122 nucleotidesAO353_26965 and AO353_26970 are separated by 241 nucleotidesAO353_26970 and AO353_26975 are separated by 130 nucleotides AO353_26960: AO353_26960 - alkyl hydroperoxide reductase subunit F, at 5,911,230 to 5,912,792 _26960 AO353_26965: AO353_26965 - alkyl hydroperoxide reductase, at 5,912,915 to 5,913,478 _26965 AO353_26970: AO353_26970 - glutathione reductase, at 5,913,720 to 5,915,078 _26970 AO353_26975: AO353_26975 - UTP--glucose-1-phosphate uridylyltransferase, at 5,915,209 to 5,916,048 _26975 Position (kb) 5913 5914 5915 5916Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5912.755 kb on + strandat 5912.756 kb on - strandat 5912.756 kb on - strandat 5912.793 kb on - strandat 5912.793 kb on - strandat 5912.793 kb on - strandat 5912.793 kb on - strandat 5912.812 kb on + strandat 5912.812 kb on + strandat 5912.812 kb on + strandat 5912.812 kb on + strandat 5912.813 kb on - strandat 5912.814 kb on + strandat 5912.814 kb on + strandat 5912.814 kb on + strandat 5912.815 kb on - strandat 5912.875 kb on + strandat 5912.875 kb on + strandat 5912.875 kb on + strandat 5912.876 kb on - strandat 5912.876 kb on - strandat 5912.879 kb on + strandat 5912.879 kb on + strandat 5912.879 kb on + strandat 5912.879 kb on + strandat 5912.879 kb on + strandat 5912.879 kb on + strandat 5912.879 kb on + strandat 5912.879 kb on + strandat 5912.880 kb on - strandat 5912.880 kb on - strandat 5912.880 kb on - strandat 5912.880 kb on - strandat 5912.880 kb on - strandat 5912.880 kb on - strandat 5912.880 kb on - strandat 5913.009 kb on + strand, within AO353_26965at 5913.009 kb on + strand, within AO353_26965at 5913.010 kb on - strand, within AO353_26965at 5913.010 kb on - strand, within AO353_26965at 5913.056 kb on + strand, within AO353_26965at 5913.056 kb on + strand, within AO353_26965at 5913.056 kb on + strand, within AO353_26965at 5913.198 kb on + strand, within AO353_26965at 5913.198 kb on + strand, within AO353_26965at 5913.198 kb on + strand, within AO353_26965at 5913.198 kb on + strand, within AO353_26965at 5913.198 kb on + strand, within AO353_26965at 5913.199 kb on - strand, within AO353_26965at 5913.199 kb on - strand, within AO353_26965at 5913.199 kb on - strand, within AO353_26965at 5913.199 kb on - strand, within AO353_26965at 5913.199 kb on - strand, within AO353_26965at 5913.199 kb on - strand, within AO353_26965at 5913.199 kb on - strand, within AO353_26965at 5913.273 kb on + strand, within AO353_26965at 5913.273 kb on + strand, within AO353_26965at 5913.273 kb on + strand, within AO353_26965at 5913.274 kb on - strand, within AO353_26965at 5913.281 kb on + strand, within AO353_26965at 5913.282 kb on - strand, within AO353_26965at 5913.306 kb on + strand, within AO353_26965at 5913.306 kb on + strand, within AO353_26965at 5913.306 kb on + strand, within AO353_26965at 5913.306 kb on + strand, within AO353_26965at 5913.306 kb on + strand, within AO353_26965at 5913.306 kb on + strand, within AO353_26965at 5913.306 kb on + strand, within AO353_26965at 5913.306 kb on + strand, within AO353_26965at 5913.306 kb on + strand, within AO353_26965at 5913.307 kb on - strand, within AO353_26965at 5913.307 kb on - strand, within AO353_26965at 5913.307 kb on - strand, within AO353_26965at 5913.363 kb on + strand, within AO353_26965at 5913.363 kb on + strand, within AO353_26965at 5913.455 kb on + strandat 5913.455 kb on + strandat 5913.455 kb on + strandat 5913.455 kb on + strandat 5913.456 kb on - strandat 5913.456 kb on - strandat 5913.473 kb on - strandat 5913.473 kb on - strandat 5913.523 kb on + strandat 5913.523 kb on + strandat 5913.524 kb on - strandat 5913.566 kb on - strandat 5913.614 kb on + strandat 5913.695 kb on + strandat 5913.696 kb on - strandat 5913.696 kb on - strandat 5913.721 kb on + strandat 5913.991 kb on + strand, within AO353_26970at 5913.992 kb on - strand, within AO353_26970at 5913.992 kb on - strand, within AO353_26970at 5914.075 kb on + strand, within AO353_26970at 5914.075 kb on + strand, within AO353_26970at 5914.076 kb on - strand, within AO353_26970at 5914.076 kb on - strand, within AO353_26970at 5914.076 kb on - strand, within AO353_26970at 5914.076 kb on - strand, within AO353_26970at 5914.210 kb on + strand, within AO353_26970at 5914.210 kb on + strand, within AO353_26970at 5914.210 kb on + strand, within AO353_26970at 5914.210 kb on + strand, within AO353_26970at 5914.211 kb on - strand, within AO353_26970at 5914.211 kb on - strand, within AO353_26970at 5914.211 kb on - strand, within AO353_26970at 5914.211 kb on - strand, within AO353_26970at 5914.306 kb on + strand, within AO353_26970at 5914.307 kb on - strand, within AO353_26970at 5914.307 kb on - strand, within AO353_26970at 5914.307 kb on - strand, within AO353_26970at 5914.552 kb on + strand, within AO353_26970at 5914.552 kb on + strand, within AO353_26970at 5914.553 kb on - strand, within AO353_26970at 5914.569 kb on + strand, within AO353_26970at 5914.569 kb on + strand, within AO353_26970at 5914.570 kb on - strand, within AO353_26970at 5914.786 kb on + strand, within AO353_26970at 5914.786 kb on + strand, within AO353_26970at 5914.787 kb on - strand, within AO353_26970at 5914.787 kb on - strand, within AO353_26970at 5914.787 kb on - strand, within AO353_26970at 5914.790 kb on + strand, within AO353_26970at 5914.791 kb on - strand, within AO353_26970at 5914.791 kb on - strand, within AO353_26970at 5915.028 kb on + strandat 5915.029 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.057 kb on - strandat 5915.210 kb on + strandat 5915.210 kb on + strandat 5915.211 kb on - strandat 5915.211 kb on - strandat 5915.211 kb on - strandat 5915.211 kb on - strandat 5915.213 kb on + strandat 5915.213 kb on + strandat 5915.213 kb on + strandat 5915.214 kb on - strandat 5915.231 kb on + strandat 5915.231 kb on + strandat 5915.231 kb on + strandat 5915.232 kb on - strandat 5915.232 kb on - strandat 5915.232 kb on - strandat 5916.059 kb on - strandat 5916.074 kb on - strandat 5916.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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5,912,755 + -2.1
5,912,756 - +0.7
5,912,756 - +0.4
5,912,793 - -0.4
5,912,793 - -0.0
5,912,793 - -1.4
5,912,793 - -0.3
5,912,812 + -0.4
5,912,812 + +0.7
5,912,812 + -2.3
5,912,812 + -0.5
5,912,813 - +0.1
5,912,814 + +0.6
5,912,814 + -0.7
5,912,814 + +0.7
5,912,815 - +2.3
5,912,875 + +0.3
5,912,875 + -0.6
5,912,875 + -0.7
5,912,876 - -0.5
5,912,876 - -1.2
5,912,879 + -0.5
5,912,879 + +1.3
5,912,879 + -0.3
5,912,879 + -1.2
5,912,879 + +1.4
5,912,879 + -0.7
5,912,879 + -0.7
5,912,879 + +0.7
5,912,880 - -0.6
5,912,880 - +0.4
5,912,880 - -0.5
5,912,880 - -1.8
5,912,880 - -0.3
5,912,880 - -0.7
5,912,880 - +0.3
5,913,009 + AO353_26965 0.17 -1.0
5,913,009 + AO353_26965 0.17 +0.9
5,913,010 - AO353_26965 0.17 +0.3
5,913,010 - AO353_26965 0.17 +0.8
5,913,056 + AO353_26965 0.25 +2.3
5,913,056 + AO353_26965 0.25 -0.4
5,913,056 + AO353_26965 0.25 +1.9
5,913,198 + AO353_26965 0.50 -0.5
5,913,198 + AO353_26965 0.50 -1.7
5,913,198 + AO353_26965 0.50 -1.4
5,913,198 + AO353_26965 0.50 -1.5
5,913,198 + AO353_26965 0.50 -1.0
5,913,199 - AO353_26965 0.50 +0.7
5,913,199 - AO353_26965 0.50 +0.3
5,913,199 - AO353_26965 0.50 -0.3
5,913,199 - AO353_26965 0.50 -0.6
5,913,199 - AO353_26965 0.50 +0.3
5,913,199 - AO353_26965 0.50 -2.4
5,913,199 - AO353_26965 0.50 +1.3
5,913,273 + AO353_26965 0.63 +0.8
5,913,273 + AO353_26965 0.63 -0.2
5,913,273 + AO353_26965 0.63 -0.3
5,913,274 - AO353_26965 0.64 -0.5
5,913,281 + AO353_26965 0.65 -1.2
5,913,282 - AO353_26965 0.65 -0.2
5,913,306 + AO353_26965 0.69 +0.3
5,913,306 + AO353_26965 0.69 -0.7
5,913,306 + AO353_26965 0.69 -1.5
5,913,306 + AO353_26965 0.69 +1.5
5,913,306 + AO353_26965 0.69 +0.0
5,913,306 + AO353_26965 0.69 -0.0
5,913,306 + AO353_26965 0.69 -1.3
5,913,306 + AO353_26965 0.69 +0.7
5,913,306 + AO353_26965 0.69 +0.6
5,913,307 - AO353_26965 0.70 -0.8
5,913,307 - AO353_26965 0.70 -1.6
5,913,307 - AO353_26965 0.70 +0.5
5,913,363 + AO353_26965 0.79 +0.3
5,913,363 + AO353_26965 0.79 +2.2
5,913,455 + +0.4
5,913,455 + +0.9
5,913,455 + -0.7
5,913,455 + -0.0
5,913,456 - -1.2
5,913,456 - -0.4
5,913,473 - -0.5
5,913,473 - -1.0
5,913,523 + -0.1
5,913,523 + +0.6
5,913,524 - +0.3
5,913,566 - +0.6
5,913,614 + -0.4
5,913,695 + +0.4
5,913,696 - +1.6
5,913,696 - +1.7
5,913,721 + -1.0
5,913,991 + AO353_26970 0.20 -2.0
5,913,992 - AO353_26970 0.20 -0.3
5,913,992 - AO353_26970 0.20 +1.3
5,914,075 + AO353_26970 0.26 -0.9
5,914,075 + AO353_26970 0.26 -0.7
5,914,076 - AO353_26970 0.26 -0.5
5,914,076 - AO353_26970 0.26 -0.6
5,914,076 - AO353_26970 0.26 -1.2
5,914,076 - AO353_26970 0.26 -0.4
5,914,210 + AO353_26970 0.36 -0.1
5,914,210 + AO353_26970 0.36 -2.8
5,914,210 + AO353_26970 0.36 -0.1
5,914,210 + AO353_26970 0.36 +0.1
5,914,211 - AO353_26970 0.36 -1.4
5,914,211 - AO353_26970 0.36 -0.9
5,914,211 - AO353_26970 0.36 -1.1
5,914,211 - AO353_26970 0.36 -0.9
5,914,306 + AO353_26970 0.43 -0.4
5,914,307 - AO353_26970 0.43 +0.5
5,914,307 - AO353_26970 0.43 -0.7
5,914,307 - AO353_26970 0.43 -0.6
5,914,552 + AO353_26970 0.61 -1.0
5,914,552 + AO353_26970 0.61 -0.1
5,914,553 - AO353_26970 0.61 -1.3
5,914,569 + AO353_26970 0.62 -0.9
5,914,569 + AO353_26970 0.62 -1.1
5,914,570 - AO353_26970 0.63 +0.6
5,914,786 + AO353_26970 0.78 -0.3
5,914,786 + AO353_26970 0.78 -0.5
5,914,787 - AO353_26970 0.79 +0.1
5,914,787 - AO353_26970 0.79 -1.0
5,914,787 - AO353_26970 0.79 -0.3
5,914,790 + AO353_26970 0.79 +0.2
5,914,791 - AO353_26970 0.79 +0.3
5,914,791 - AO353_26970 0.79 -1.5
5,915,028 + +0.8
5,915,029 - +0.2
5,915,057 - -1.9
5,915,057 - -0.5
5,915,057 - +0.5
5,915,057 - -2.3
5,915,057 - -0.7
5,915,057 - -1.0
5,915,057 - +0.7
5,915,057 - +0.3
5,915,057 - -0.5
5,915,057 - +1.9
5,915,057 - +0.6
5,915,057 - -1.6
5,915,057 - -0.2
5,915,057 - -0.5
5,915,057 - -2.1
5,915,210 + -0.1
5,915,210 + -0.8
5,915,211 - -0.8
5,915,211 - -0.9
5,915,211 - -0.6
5,915,211 - -1.3
5,915,213 + +0.1
5,915,213 + -0.0
5,915,213 + -1.4
5,915,214 - -0.1
5,915,231 + -1.5
5,915,231 + +0.1
5,915,231 + -0.4
5,915,232 - -1.3
5,915,232 - +0.3
5,915,232 - -1.2
5,916,059 - -0.7
5,916,074 - +0.3
5,916,074 - +0.4

Or see this region's nucleotide sequence