Experiment: Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_12820 and AO353_12825 overlap by 11 nucleotides AO353_12825 and AO353_12830 overlap by 1 nucleotides
AO353_12820: AO353_12820 - type IV secretion protein Rhs, at 2,828,554 to 2,830,566
_12820
AO353_12825: AO353_12825 - hypothetical protein, at 2,830,556 to 2,831,293
_12825
AO353_12830: AO353_12830 - type IV secretion protein Rhs, at 2,831,293 to 2,836,077
_12830
Position (kb)
2830
2831
2832 Strain fitness (log2 ratio)
-2
-1
0
1 at 2829.602 kb on + strand, within AO353_12820 at 2829.602 kb on + strand, within AO353_12820 at 2829.602 kb on + strand, within AO353_12820 at 2829.602 kb on + strand, within AO353_12820 at 2829.603 kb on - strand, within AO353_12820 at 2829.603 kb on - strand, within AO353_12820 at 2829.830 kb on + strand, within AO353_12820 at 2829.988 kb on + strand, within AO353_12820 at 2829.989 kb on - strand, within AO353_12820 at 2830.033 kb on + strand, within AO353_12820 at 2830.033 kb on + strand, within AO353_12820 at 2830.034 kb on - strand, within AO353_12820 at 2830.067 kb on + strand, within AO353_12820 at 2830.067 kb on + strand, within AO353_12820 at 2830.067 kb on + strand, within AO353_12820 at 2830.067 kb on + strand, within AO353_12820 at 2830.067 kb on + strand, within AO353_12820 at 2830.067 kb on + strand, within AO353_12820 at 2830.067 kb on + strand, within AO353_12820 at 2830.067 kb on + strand, within AO353_12820 at 2830.068 kb on - strand, within AO353_12820 at 2830.068 kb on - strand, within AO353_12820 at 2830.068 kb on - strand, within AO353_12820 at 2830.068 kb on - strand, within AO353_12820 at 2830.208 kb on + strand, within AO353_12820 at 2830.724 kb on + strand, within AO353_12825 at 2830.724 kb on + strand, within AO353_12825 at 2830.724 kb on + strand, within AO353_12825 at 2830.725 kb on - strand, within AO353_12825 at 2830.725 kb on - strand, within AO353_12825 at 2830.751 kb on + strand, within AO353_12825 at 2830.751 kb on + strand, within AO353_12825 at 2830.752 kb on - strand, within AO353_12825 at 2830.752 kb on - strand, within AO353_12825 at 2830.752 kb on - strand, within AO353_12825 at 2830.879 kb on + strand, within AO353_12825 at 2830.880 kb on - strand, within AO353_12825 at 2830.880 kb on - strand, within AO353_12825 at 2830.894 kb on - strand, within AO353_12825 at 2830.912 kb on - strand, within AO353_12825 at 2830.937 kb on + strand, within AO353_12825 at 2830.938 kb on - strand, within AO353_12825 at 2830.938 kb on - strand, within AO353_12825 at 2830.938 kb on - strand, within AO353_12825 at 2830.938 kb on - strand, within AO353_12825 at 2830.938 kb on - strand, within AO353_12825 at 2830.938 kb on - strand, within AO353_12825 at 2831.175 kb on - strand, within AO353_12825 at 2831.175 kb on - strand, within AO353_12825 at 2831.199 kb on + strand, within AO353_12825 at 2831.199 kb on + strand, within AO353_12825 at 2831.199 kb on + strand, within AO353_12825 at 2831.334 kb on + strand at 2831.334 kb on + strand at 2831.334 kb on + strand at 2831.380 kb on - strand at 2831.380 kb on - strand at 2831.401 kb on - strand at 2831.563 kb on + strand at 2831.563 kb on + strand at 2831.564 kb on - strand at 2831.564 kb on - strand at 2831.564 kb on - strand at 2831.583 kb on + strand at 2831.583 kb on + strand at 2831.583 kb on + strand at 2831.583 kb on + strand at 2831.584 kb on - strand at 2831.661 kb on + strand at 2831.684 kb on - strand at 2831.684 kb on - strand at 2831.743 kb on + strand at 2831.743 kb on + strand at 2831.744 kb on - strand at 2831.744 kb on - strand at 2832.229 kb on + strand, within AO353_12830 at 2832.230 kb on - strand, within AO353_12830 at 2832.230 kb on - strand, within AO353_12830 at 2832.230 kb on - strand, within AO353_12830 at 2832.230 kb on - strand, within AO353_12830
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol% remove 2,829,602 + AO353_12820 0.52 +1.7 2,829,602 + AO353_12820 0.52 +0.7 2,829,602 + AO353_12820 0.52 -0.5 2,829,602 + AO353_12820 0.52 -0.4 2,829,603 - AO353_12820 0.52 -0.5 2,829,603 - AO353_12820 0.52 -0.8 2,829,830 + AO353_12820 0.63 -0.6 2,829,988 + AO353_12820 0.71 +1.7 2,829,989 - AO353_12820 0.71 -0.7 2,830,033 + AO353_12820 0.73 +0.2 2,830,033 + AO353_12820 0.73 +1.2 2,830,034 - AO353_12820 0.74 +0.9 2,830,067 + AO353_12820 0.75 -0.4 2,830,067 + AO353_12820 0.75 +0.6 2,830,067 + AO353_12820 0.75 -0.8 2,830,067 + AO353_12820 0.75 -0.3 2,830,067 + AO353_12820 0.75 -1.2 2,830,067 + AO353_12820 0.75 +1.5 2,830,067 + AO353_12820 0.75 +0.4 2,830,067 + AO353_12820 0.75 +0.4 2,830,068 - AO353_12820 0.75 -0.0 2,830,068 - AO353_12820 0.75 +0.5 2,830,068 - AO353_12820 0.75 -1.1 2,830,068 - AO353_12820 0.75 -2.2 2,830,208 + AO353_12820 0.82 -0.5 2,830,724 + AO353_12825 0.23 -1.9 2,830,724 + AO353_12825 0.23 +0.7 2,830,724 + AO353_12825 0.23 -1.6 2,830,725 - AO353_12825 0.23 -1.2 2,830,725 - AO353_12825 0.23 -0.4 2,830,751 + AO353_12825 0.26 -0.2 2,830,751 + AO353_12825 0.26 +0.7 2,830,752 - AO353_12825 0.27 -0.8 2,830,752 - AO353_12825 0.27 -0.3 2,830,752 - AO353_12825 0.27 +0.1 2,830,879 + AO353_12825 0.44 -0.8 2,830,880 - AO353_12825 0.44 -0.2 2,830,880 - AO353_12825 0.44 -0.2 2,830,894 - AO353_12825 0.46 -0.4 2,830,912 - AO353_12825 0.48 -0.1 2,830,937 + AO353_12825 0.52 -0.2 2,830,938 - AO353_12825 0.52 -1.0 2,830,938 - AO353_12825 0.52 -2.0 2,830,938 - AO353_12825 0.52 -1.4 2,830,938 - AO353_12825 0.52 -0.7 2,830,938 - AO353_12825 0.52 -0.2 2,830,938 - AO353_12825 0.52 -0.8 2,831,175 - AO353_12825 0.84 -0.3 2,831,175 - AO353_12825 0.84 -2.1 2,831,199 + AO353_12825 0.87 -0.3 2,831,199 + AO353_12825 0.87 +1.2 2,831,199 + AO353_12825 0.87 -0.0 2,831,334 + -1.2 2,831,334 + -1.1 2,831,334 + -1.0 2,831,380 - +0.2 2,831,380 - +0.6 2,831,401 - +0.7 2,831,563 + +1.4 2,831,563 + -0.0 2,831,564 - +1.4 2,831,564 - -0.6 2,831,564 - -0.0 2,831,583 + -1.2 2,831,583 + -2.0 2,831,583 + -0.1 2,831,583 + -1.5 2,831,584 - +0.6 2,831,661 + +0.8 2,831,684 - -1.2 2,831,684 - +0.2 2,831,743 + -0.2 2,831,743 + +0.2 2,831,744 - -0.4 2,831,744 - +0.0 2,832,229 + AO353_12830 0.20 +0.0 2,832,230 - AO353_12830 0.20 +0.6 2,832,230 - AO353_12830 0.20 +0.7 2,832,230 - AO353_12830 0.20 +0.4 2,832,230 - AO353_12830 0.20 +0.9
Or see this region's nucleotide sequence