Experiment: Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04395 and AO353_04400 are separated by 12 nucleotides AO353_04400 and AO353_04405 are separated by 71 nucleotides
AO353_04395: AO353_04395 - cytochrome C assembly protein, at 946,606 to 947,418
_04395
AO353_04400: AO353_04400 - transporter, at 947,431 to 948,696
_04400
AO353_04405: AO353_04405 - MFS transporter, at 948,768 to 950,084
_04405
Position (kb) 947
948
949 Strain fitness (log2 ratio) -2
-1
0
1
2 at 946.432 kb on - strand at 946.497 kb on - strand at 946.497 kb on - strand at 946.497 kb on - strand at 946.564 kb on + strand at 946.564 kb on + strand at 946.564 kb on + strand at 946.564 kb on + strand at 946.565 kb on - strand at 946.565 kb on - strand at 946.596 kb on - strand at 946.605 kb on + strand at 946.605 kb on + strand at 946.605 kb on + strand at 946.605 kb on + strand at 946.605 kb on + strand at 946.605 kb on + strand at 946.606 kb on - strand at 946.606 kb on - strand at 946.606 kb on - strand at 946.606 kb on - strand at 946.606 kb on - strand at 946.606 kb on - strand at 946.606 kb on - strand at 946.606 kb on - strand at 946.606 kb on - strand at 946.655 kb on + strand at 946.655 kb on + strand at 946.655 kb on + strand at 946.656 kb on - strand at 946.656 kb on - strand at 946.656 kb on - strand at 946.656 kb on - strand at 946.656 kb on - strand at 946.656 kb on - strand at 946.656 kb on - strand at 946.657 kb on + strand at 946.658 kb on - strand at 946.658 kb on - strand at 946.658 kb on - strand at 946.658 kb on - strand at 946.658 kb on - strand at 946.658 kb on - strand at 946.675 kb on + strand at 946.998 kb on + strand, within AO353_04395 at 947.374 kb on + strand at 947.437 kb on - strand at 947.448 kb on - strand at 947.448 kb on - strand at 947.448 kb on - strand at 947.528 kb on + strand at 947.528 kb on + strand at 947.528 kb on + strand at 947.528 kb on + strand at 947.528 kb on + strand at 947.528 kb on + strand at 947.528 kb on + strand at 947.528 kb on + strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.529 kb on - strand at 947.613 kb on + strand, within AO353_04400 at 947.614 kb on - strand, within AO353_04400 at 947.636 kb on + strand, within AO353_04400 at 947.723 kb on + strand, within AO353_04400 at 947.724 kb on - strand, within AO353_04400 at 947.724 kb on - strand, within AO353_04400 at 947.724 kb on - strand, within AO353_04400 at 947.724 kb on - strand, within AO353_04400 at 947.724 kb on - strand, within AO353_04400 at 947.735 kb on - strand, within AO353_04400 at 947.816 kb on + strand, within AO353_04400 at 947.817 kb on - strand, within AO353_04400 at 947.822 kb on - strand, within AO353_04400 at 948.156 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.319 kb on + strand, within AO353_04400 at 948.319 kb on + strand, within AO353_04400 at 948.319 kb on + strand, within AO353_04400 at 948.320 kb on - strand, within AO353_04400 at 948.329 kb on + strand, within AO353_04400 at 948.329 kb on + strand, within AO353_04400 at 948.329 kb on + strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.647 kb on + strand at 948.648 kb on - strand at 948.695 kb on - strand at 948.695 kb on - strand at 948.695 kb on - strand at 948.724 kb on - strand at 948.726 kb on + strand at 948.726 kb on + strand at 948.726 kb on + strand at 948.726 kb on + strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.773 kb on + strand at 948.773 kb on + strand at 948.774 kb on - strand at 948.786 kb on + strand at 948.786 kb on + strand at 948.786 kb on + strand at 948.786 kb on + strand at 948.787 kb on - strand at 948.787 kb on - strand at 948.787 kb on - strand at 948.870 kb on + strand at 948.871 kb on - strand at 948.871 kb on - strand at 948.871 kb on - strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.885 kb on + strand at 949.000 kb on + strand, within AO353_04405 at 949.001 kb on - strand, within AO353_04405 at 949.001 kb on - strand, within AO353_04405 at 949.114 kb on - strand, within AO353_04405 at 949.153 kb on + strand, within AO353_04405 at 949.153 kb on + strand, within AO353_04405 at 949.154 kb on - strand, within AO353_04405 at 949.154 kb on - strand, within AO353_04405 at 949.278 kb on - strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.405 kb on - strand, within AO353_04405 at 949.501 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.606 kb on - strand, within AO353_04405 at 949.606 kb on - strand, within AO353_04405
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol% remove 946,432 - +0.5 946,497 - -0.3 946,497 - +1.1 946,497 - -0.2 946,564 + -0.5 946,564 + -0.2 946,564 + -0.8 946,564 + -0.2 946,565 - +0.1 946,565 - -0.3 946,596 - +1.8 946,605 + -0.8 946,605 + +0.6 946,605 + -2.5 946,605 + -0.5 946,605 + +1.4 946,605 + -1.8 946,606 - -0.5 946,606 - +0.3 946,606 - -1.2 946,606 - -0.5 946,606 - +0.2 946,606 - +0.8 946,606 - -1.4 946,606 - +1.5 946,606 - -0.1 946,655 + -0.7 946,655 + +1.0 946,655 + -0.2 946,656 - -1.2 946,656 - +1.1 946,656 - -0.0 946,656 - -0.7 946,656 - -0.4 946,656 - +0.5 946,656 - -0.7 946,657 + -0.0 946,658 - -2.3 946,658 - -1.2 946,658 - +0.2 946,658 - -0.7 946,658 - -0.4 946,658 - -0.5 946,675 + -1.0 946,998 + AO353_04395 0.48 -0.3 947,374 + +0.8 947,437 - +0.5 947,448 - -1.0 947,448 - -0.3 947,448 - -0.8 947,528 + -0.2 947,528 + +0.4 947,528 + +0.1 947,528 + +0.1 947,528 + -1.5 947,528 + -0.3 947,528 + -1.8 947,528 + +0.5 947,529 - -1.2 947,529 - -0.1 947,529 - -1.0 947,529 - +0.4 947,529 - -0.1 947,529 - -0.2 947,529 - -1.4 947,529 - +0.2 947,529 - +0.7 947,529 - -1.1 947,529 - -1.4 947,529 - -0.7 947,529 - -0.9 947,529 - -0.4 947,529 - -0.3 947,529 - +0.2 947,529 - +0.9 947,529 - +0.2 947,529 - -0.6 947,529 - +0.2 947,613 + AO353_04400 0.14 -0.7 947,614 - AO353_04400 0.14 -0.8 947,636 + AO353_04400 0.16 -1.1 947,723 + AO353_04400 0.23 +0.4 947,724 - AO353_04400 0.23 -0.0 947,724 - AO353_04400 0.23 -0.9 947,724 - AO353_04400 0.23 -0.7 947,724 - AO353_04400 0.23 -0.8 947,724 - AO353_04400 0.23 -0.8 947,735 - AO353_04400 0.24 -1.0 947,816 + AO353_04400 0.30 -0.2 947,817 - AO353_04400 0.30 +0.5 947,822 - AO353_04400 0.31 -0.5 948,156 + AO353_04400 0.57 -1.4 948,232 + AO353_04400 0.63 -0.1 948,232 + AO353_04400 0.63 -0.1 948,232 + AO353_04400 0.63 -0.1 948,232 + AO353_04400 0.63 -0.4 948,232 + AO353_04400 0.63 -1.6 948,232 + AO353_04400 0.63 -0.6 948,232 + AO353_04400 0.63 -1.1 948,233 - AO353_04400 0.63 -1.0 948,233 - AO353_04400 0.63 -1.0 948,233 - AO353_04400 0.63 -0.1 948,233 - AO353_04400 0.63 -0.5 948,233 - AO353_04400 0.63 -1.2 948,233 - AO353_04400 0.63 -0.8 948,233 - AO353_04400 0.63 +1.1 948,233 - AO353_04400 0.63 -0.4 948,233 - AO353_04400 0.63 +1.0 948,233 - AO353_04400 0.63 -0.8 948,233 - AO353_04400 0.63 -0.5 948,319 + AO353_04400 0.70 +0.8 948,319 + AO353_04400 0.70 -0.7 948,319 + AO353_04400 0.70 -0.9 948,320 - AO353_04400 0.70 +1.0 948,329 + AO353_04400 0.71 +0.2 948,329 + AO353_04400 0.71 -0.5 948,329 + AO353_04400 0.71 -0.5 948,330 - AO353_04400 0.71 -0.5 948,330 - AO353_04400 0.71 -2.3 948,330 - AO353_04400 0.71 -1.7 948,330 - AO353_04400 0.71 -1.6 948,330 - AO353_04400 0.71 -0.7 948,330 - AO353_04400 0.71 -0.0 948,647 + -1.5 948,648 - -0.0 948,695 - -0.8 948,695 - -0.8 948,695 - -0.5 948,724 - -0.6 948,726 + -1.0 948,726 + -0.8 948,726 + -0.6 948,726 + -0.2 948,727 - -0.1 948,727 - +0.2 948,727 - +1.3 948,727 - +0.1 948,727 - -1.7 948,727 - -1.4 948,773 + -1.2 948,773 + -0.5 948,774 - +0.1 948,786 + +0.7 948,786 + -1.2 948,786 + -0.5 948,786 + +1.0 948,787 - -0.8 948,787 - +0.4 948,787 - +0.4 948,870 + -0.6 948,871 - +0.7 948,871 - -0.0 948,871 - -1.2 948,879 + -0.3 948,879 + +0.2 948,879 + +0.1 948,879 + +1.5 948,879 + +0.2 948,879 + -0.2 948,879 + +0.6 948,879 + -0.5 948,879 + -0.1 948,880 - +0.2 948,880 - +0.2 948,880 - +0.3 948,880 - +1.1 948,880 - -0.2 948,880 - +0.1 948,880 - -1.1 948,880 - +1.1 948,880 - +0.5 948,880 - -0.6 948,885 + -0.1 949,000 + AO353_04405 0.18 +0.1 949,001 - AO353_04405 0.18 -0.8 949,001 - AO353_04405 0.18 -0.2 949,114 - AO353_04405 0.26 -0.0 949,153 + AO353_04405 0.29 +0.1 949,153 + AO353_04405 0.29 +0.0 949,154 - AO353_04405 0.29 -1.1 949,154 - AO353_04405 0.29 +0.1 949,278 - AO353_04405 0.39 +0.3 949,404 + AO353_04405 0.48 +0.0 949,404 + AO353_04405 0.48 +0.8 949,404 + AO353_04405 0.48 -0.4 949,404 + AO353_04405 0.48 +0.9 949,405 - AO353_04405 0.48 +0.6 949,501 - AO353_04405 0.56 +0.3 949,558 - AO353_04405 0.60 +0.8 949,558 - AO353_04405 0.60 -0.0 949,558 - AO353_04405 0.60 +1.5 949,584 + AO353_04405 0.62 -0.2 949,584 + AO353_04405 0.62 -0.7 949,584 + AO353_04405 0.62 -0.2 949,585 - AO353_04405 0.62 +0.1 949,585 - AO353_04405 0.62 -0.6 949,585 - AO353_04405 0.62 +0.0 949,606 - AO353_04405 0.64 +0.7 949,606 - AO353_04405 0.64 +0.2
Or see this region's nucleotide sequence