Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04400

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04395 and AO353_04400 are separated by 12 nucleotidesAO353_04400 and AO353_04405 are separated by 71 nucleotides AO353_04395: AO353_04395 - cytochrome C assembly protein, at 946,606 to 947,418 _04395 AO353_04400: AO353_04400 - transporter, at 947,431 to 948,696 _04400 AO353_04405: AO353_04405 - MFS transporter, at 948,768 to 950,084 _04405 Position (kb) 947 948 949Strain fitness (log2 ratio) -2 -1 0 1 2at 946.432 kb on - strandat 946.497 kb on - strandat 946.497 kb on - strandat 946.497 kb on - strandat 946.564 kb on + strandat 946.564 kb on + strandat 946.564 kb on + strandat 946.564 kb on + strandat 946.565 kb on - strandat 946.565 kb on - strandat 946.596 kb on - strandat 946.605 kb on + strandat 946.605 kb on + strandat 946.605 kb on + strandat 946.605 kb on + strandat 946.605 kb on + strandat 946.605 kb on + strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.655 kb on + strandat 946.655 kb on + strandat 946.655 kb on + strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.657 kb on + strandat 946.658 kb on - strandat 946.658 kb on - strandat 946.658 kb on - strandat 946.658 kb on - strandat 946.658 kb on - strandat 946.658 kb on - strandat 946.675 kb on + strandat 946.998 kb on + strand, within AO353_04395at 947.374 kb on + strandat 947.437 kb on - strandat 947.448 kb on - strandat 947.448 kb on - strandat 947.448 kb on - strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.613 kb on + strand, within AO353_04400at 947.614 kb on - strand, within AO353_04400at 947.636 kb on + strand, within AO353_04400at 947.723 kb on + strand, within AO353_04400at 947.724 kb on - strand, within AO353_04400at 947.724 kb on - strand, within AO353_04400at 947.724 kb on - strand, within AO353_04400at 947.724 kb on - strand, within AO353_04400at 947.724 kb on - strand, within AO353_04400at 947.735 kb on - strand, within AO353_04400at 947.816 kb on + strand, within AO353_04400at 947.817 kb on - strand, within AO353_04400at 947.822 kb on - strand, within AO353_04400at 948.156 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.319 kb on + strand, within AO353_04400at 948.319 kb on + strand, within AO353_04400at 948.319 kb on + strand, within AO353_04400at 948.320 kb on - strand, within AO353_04400at 948.329 kb on + strand, within AO353_04400at 948.329 kb on + strand, within AO353_04400at 948.329 kb on + strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.647 kb on + strandat 948.648 kb on - strandat 948.695 kb on - strandat 948.695 kb on - strandat 948.695 kb on - strandat 948.724 kb on - strandat 948.726 kb on + strandat 948.726 kb on + strandat 948.726 kb on + strandat 948.726 kb on + strandat 948.727 kb on - strandat 948.727 kb on - strandat 948.727 kb on - strandat 948.727 kb on - strandat 948.727 kb on - strandat 948.727 kb on - strandat 948.773 kb on + strandat 948.773 kb on + strandat 948.774 kb on - strandat 948.786 kb on + strandat 948.786 kb on + strandat 948.786 kb on + strandat 948.786 kb on + strandat 948.787 kb on - strandat 948.787 kb on - strandat 948.787 kb on - strandat 948.870 kb on + strandat 948.871 kb on - strandat 948.871 kb on - strandat 948.871 kb on - strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.885 kb on + strandat 949.000 kb on + strand, within AO353_04405at 949.001 kb on - strand, within AO353_04405at 949.001 kb on - strand, within AO353_04405at 949.114 kb on - strand, within AO353_04405at 949.153 kb on + strand, within AO353_04405at 949.153 kb on + strand, within AO353_04405at 949.154 kb on - strand, within AO353_04405at 949.154 kb on - strand, within AO353_04405at 949.278 kb on - strand, within AO353_04405at 949.404 kb on + strand, within AO353_04405at 949.404 kb on + strand, within AO353_04405at 949.404 kb on + strand, within AO353_04405at 949.404 kb on + strand, within AO353_04405at 949.405 kb on - strand, within AO353_04405at 949.501 kb on - strand, within AO353_04405at 949.558 kb on - strand, within AO353_04405at 949.558 kb on - strand, within AO353_04405at 949.558 kb on - strand, within AO353_04405at 949.584 kb on + strand, within AO353_04405at 949.584 kb on + strand, within AO353_04405at 949.584 kb on + strand, within AO353_04405at 949.585 kb on - strand, within AO353_04405at 949.585 kb on - strand, within AO353_04405at 949.585 kb on - strand, within AO353_04405at 949.606 kb on - strand, within AO353_04405at 949.606 kb on - strand, within AO353_04405

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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946,432 - +0.5
946,497 - -0.3
946,497 - +1.1
946,497 - -0.2
946,564 + -0.5
946,564 + -0.2
946,564 + -0.8
946,564 + -0.2
946,565 - +0.1
946,565 - -0.3
946,596 - +1.8
946,605 + -0.8
946,605 + +0.6
946,605 + -2.5
946,605 + -0.5
946,605 + +1.4
946,605 + -1.8
946,606 - -0.5
946,606 - +0.3
946,606 - -1.2
946,606 - -0.5
946,606 - +0.2
946,606 - +0.8
946,606 - -1.4
946,606 - +1.5
946,606 - -0.1
946,655 + -0.7
946,655 + +1.0
946,655 + -0.2
946,656 - -1.2
946,656 - +1.1
946,656 - -0.0
946,656 - -0.7
946,656 - -0.4
946,656 - +0.5
946,656 - -0.7
946,657 + -0.0
946,658 - -2.3
946,658 - -1.2
946,658 - +0.2
946,658 - -0.7
946,658 - -0.4
946,658 - -0.5
946,675 + -1.0
946,998 + AO353_04395 0.48 -0.3
947,374 + +0.8
947,437 - +0.5
947,448 - -1.0
947,448 - -0.3
947,448 - -0.8
947,528 + -0.2
947,528 + +0.4
947,528 + +0.1
947,528 + +0.1
947,528 + -1.5
947,528 + -0.3
947,528 + -1.8
947,528 + +0.5
947,529 - -1.2
947,529 - -0.1
947,529 - -1.0
947,529 - +0.4
947,529 - -0.1
947,529 - -0.2
947,529 - -1.4
947,529 - +0.2
947,529 - +0.7
947,529 - -1.1
947,529 - -1.4
947,529 - -0.7
947,529 - -0.9
947,529 - -0.4
947,529 - -0.3
947,529 - +0.2
947,529 - +0.9
947,529 - +0.2
947,529 - -0.6
947,529 - +0.2
947,613 + AO353_04400 0.14 -0.7
947,614 - AO353_04400 0.14 -0.8
947,636 + AO353_04400 0.16 -1.1
947,723 + AO353_04400 0.23 +0.4
947,724 - AO353_04400 0.23 -0.0
947,724 - AO353_04400 0.23 -0.9
947,724 - AO353_04400 0.23 -0.7
947,724 - AO353_04400 0.23 -0.8
947,724 - AO353_04400 0.23 -0.8
947,735 - AO353_04400 0.24 -1.0
947,816 + AO353_04400 0.30 -0.2
947,817 - AO353_04400 0.30 +0.5
947,822 - AO353_04400 0.31 -0.5
948,156 + AO353_04400 0.57 -1.4
948,232 + AO353_04400 0.63 -0.1
948,232 + AO353_04400 0.63 -0.1
948,232 + AO353_04400 0.63 -0.1
948,232 + AO353_04400 0.63 -0.4
948,232 + AO353_04400 0.63 -1.6
948,232 + AO353_04400 0.63 -0.6
948,232 + AO353_04400 0.63 -1.1
948,233 - AO353_04400 0.63 -1.0
948,233 - AO353_04400 0.63 -1.0
948,233 - AO353_04400 0.63 -0.1
948,233 - AO353_04400 0.63 -0.5
948,233 - AO353_04400 0.63 -1.2
948,233 - AO353_04400 0.63 -0.8
948,233 - AO353_04400 0.63 +1.1
948,233 - AO353_04400 0.63 -0.4
948,233 - AO353_04400 0.63 +1.0
948,233 - AO353_04400 0.63 -0.8
948,233 - AO353_04400 0.63 -0.5
948,319 + AO353_04400 0.70 +0.8
948,319 + AO353_04400 0.70 -0.7
948,319 + AO353_04400 0.70 -0.9
948,320 - AO353_04400 0.70 +1.0
948,329 + AO353_04400 0.71 +0.2
948,329 + AO353_04400 0.71 -0.5
948,329 + AO353_04400 0.71 -0.5
948,330 - AO353_04400 0.71 -0.5
948,330 - AO353_04400 0.71 -2.3
948,330 - AO353_04400 0.71 -1.7
948,330 - AO353_04400 0.71 -1.6
948,330 - AO353_04400 0.71 -0.7
948,330 - AO353_04400 0.71 -0.0
948,647 + -1.5
948,648 - -0.0
948,695 - -0.8
948,695 - -0.8
948,695 - -0.5
948,724 - -0.6
948,726 + -1.0
948,726 + -0.8
948,726 + -0.6
948,726 + -0.2
948,727 - -0.1
948,727 - +0.2
948,727 - +1.3
948,727 - +0.1
948,727 - -1.7
948,727 - -1.4
948,773 + -1.2
948,773 + -0.5
948,774 - +0.1
948,786 + +0.7
948,786 + -1.2
948,786 + -0.5
948,786 + +1.0
948,787 - -0.8
948,787 - +0.4
948,787 - +0.4
948,870 + -0.6
948,871 - +0.7
948,871 - -0.0
948,871 - -1.2
948,879 + -0.3
948,879 + +0.2
948,879 + +0.1
948,879 + +1.5
948,879 + +0.2
948,879 + -0.2
948,879 + +0.6
948,879 + -0.5
948,879 + -0.1
948,880 - +0.2
948,880 - +0.2
948,880 - +0.3
948,880 - +1.1
948,880 - -0.2
948,880 - +0.1
948,880 - -1.1
948,880 - +1.1
948,880 - +0.5
948,880 - -0.6
948,885 + -0.1
949,000 + AO353_04405 0.18 +0.1
949,001 - AO353_04405 0.18 -0.8
949,001 - AO353_04405 0.18 -0.2
949,114 - AO353_04405 0.26 -0.0
949,153 + AO353_04405 0.29 +0.1
949,153 + AO353_04405 0.29 +0.0
949,154 - AO353_04405 0.29 -1.1
949,154 - AO353_04405 0.29 +0.1
949,278 - AO353_04405 0.39 +0.3
949,404 + AO353_04405 0.48 +0.0
949,404 + AO353_04405 0.48 +0.8
949,404 + AO353_04405 0.48 -0.4
949,404 + AO353_04405 0.48 +0.9
949,405 - AO353_04405 0.48 +0.6
949,501 - AO353_04405 0.56 +0.3
949,558 - AO353_04405 0.60 +0.8
949,558 - AO353_04405 0.60 -0.0
949,558 - AO353_04405 0.60 +1.5
949,584 + AO353_04405 0.62 -0.2
949,584 + AO353_04405 0.62 -0.7
949,584 + AO353_04405 0.62 -0.2
949,585 - AO353_04405 0.62 +0.1
949,585 - AO353_04405 0.62 -0.6
949,585 - AO353_04405 0.62 +0.0
949,606 - AO353_04405 0.64 +0.7
949,606 - AO353_04405 0.64 +0.2

Or see this region's nucleotide sequence