Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03035

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03030 and AO353_03035 are separated by 33 nucleotidesAO353_03035 and AO353_03040 are separated by 112 nucleotidesAO353_03040 and AO353_03045 are separated by 36 nucleotides AO353_03030: AO353_03030 - hypothetical protein, at 643,279 to 647,994 _03030 AO353_03035: AO353_03035 - AraC family transcriptional regulator, at 648,028 to 649,008 _03035 AO353_03040: AO353_03040 - ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data), at 649,121 to 649,885 _03040 AO353_03045: AO353_03045 - ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data), at 649,922 to 650,620 _03045 Position (kb) 648 649 650Strain fitness (log2 ratio) -2 -1 0 1at 647.083 kb on + strand, within AO353_03030at 647.083 kb on + strand, within AO353_03030at 647.083 kb on + strand, within AO353_03030at 647.083 kb on + strand, within AO353_03030at 647.316 kb on + strand, within AO353_03030at 647.317 kb on - strand, within AO353_03030at 647.317 kb on - strand, within AO353_03030at 647.420 kb on + strand, within AO353_03030at 647.420 kb on + strand, within AO353_03030at 647.421 kb on - strand, within AO353_03030at 647.438 kb on + strand, within AO353_03030at 647.598 kb on - strandat 647.629 kb on + strandat 647.630 kb on - strandat 647.630 kb on - strandat 647.810 kb on + strandat 647.810 kb on + strandat 647.810 kb on + strandat 647.810 kb on + strandat 647.810 kb on + strandat 647.811 kb on - strandat 647.811 kb on - strandat 647.811 kb on - strandat 647.811 kb on - strandat 647.811 kb on - strandat 647.883 kb on - strandat 647.927 kb on + strandat 647.927 kb on + strandat 647.927 kb on + strandat 647.927 kb on + strandat 647.928 kb on - strandat 647.993 kb on - strandat 648.087 kb on + strandat 648.239 kb on + strand, within AO353_03035at 648.239 kb on + strand, within AO353_03035at 648.240 kb on - strand, within AO353_03035at 648.242 kb on + strand, within AO353_03035at 648.243 kb on - strand, within AO353_03035at 648.243 kb on - strand, within AO353_03035at 648.243 kb on - strand, within AO353_03035at 648.266 kb on + strand, within AO353_03035at 648.266 kb on + strand, within AO353_03035at 648.266 kb on + strand, within AO353_03035at 648.266 kb on + strand, within AO353_03035at 648.267 kb on - strand, within AO353_03035at 648.267 kb on - strand, within AO353_03035at 648.267 kb on - strand, within AO353_03035at 648.966 kb on + strandat 649.037 kb on + strandat 649.064 kb on + strandat 649.065 kb on - strandat 649.065 kb on - strandat 649.097 kb on + strandat 649.098 kb on - strandat 649.098 kb on - strandat 649.098 kb on - strandat 649.122 kb on + strandat 649.122 kb on + strandat 649.122 kb on + strandat 649.122 kb on + strandat 649.122 kb on + strandat 649.123 kb on - strandat 649.123 kb on - strandat 649.123 kb on - strandat 649.438 kb on + strand, within AO353_03040at 649.438 kb on + strand, within AO353_03040at 649.438 kb on + strand, within AO353_03040at 649.438 kb on + strand, within AO353_03040at 649.438 kb on + strand, within AO353_03040at 649.438 kb on + strand, within AO353_03040at 649.438 kb on + strand, within AO353_03040at 649.439 kb on - strand, within AO353_03040at 649.439 kb on - strand, within AO353_03040at 649.439 kb on - strand, within AO353_03040at 649.439 kb on - strand, within AO353_03040at 649.439 kb on - strand, within AO353_03040at 649.439 kb on - strand, within AO353_03040at 649.439 kb on - strand, within AO353_03040at 649.439 kb on - strand, within AO353_03040at 649.449 kb on + strand, within AO353_03040at 649.450 kb on - strand, within AO353_03040at 649.450 kb on - strand, within AO353_03040at 649.459 kb on + strand, within AO353_03040at 649.459 kb on + strand, within AO353_03040at 649.488 kb on + strand, within AO353_03040at 649.488 kb on + strand, within AO353_03040at 649.488 kb on + strand, within AO353_03040at 649.488 kb on + strand, within AO353_03040at 649.488 kb on + strand, within AO353_03040at 649.489 kb on - strand, within AO353_03040at 649.489 kb on - strand, within AO353_03040at 649.489 kb on - strand, within AO353_03040at 649.756 kb on + strand, within AO353_03040at 649.756 kb on + strand, within AO353_03040at 649.757 kb on - strand, within AO353_03040at 649.757 kb on - strand, within AO353_03040at 649.757 kb on - strand, within AO353_03040at 649.848 kb on + strandat 649.848 kb on + strandat 649.855 kb on + strandat 649.856 kb on - strandat 649.856 kb on - strandat 649.881 kb on + strandat 649.881 kb on + strandat 649.881 kb on + strandat 649.881 kb on + strandat 649.882 kb on - strandat 649.882 kb on - strandat 649.882 kb on - strandat 649.882 kb on - strandat 649.944 kb on + strandat 649.944 kb on + strandat 650.007 kb on + strand, within AO353_03045at 650.007 kb on + strand, within AO353_03045at 650.007 kb on + strand, within AO353_03045at 650.007 kb on + strand, within AO353_03045at 650.007 kb on + strand, within AO353_03045at 650.007 kb on + strand, within AO353_03045at 650.008 kb on - strand, within AO353_03045at 650.008 kb on - strand, within AO353_03045at 650.008 kb on - strand, within AO353_03045at 650.008 kb on - strand, within AO353_03045

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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647,083 + AO353_03030 0.81 +1.3
647,083 + AO353_03030 0.81 -1.2
647,083 + AO353_03030 0.81 -1.1
647,083 + AO353_03030 0.81 +0.9
647,316 + AO353_03030 0.86 -0.9
647,317 - AO353_03030 0.86 +0.5
647,317 - AO353_03030 0.86 -1.8
647,420 + AO353_03030 0.88 +0.8
647,420 + AO353_03030 0.88 +0.2
647,421 - AO353_03030 0.88 +0.9
647,438 + AO353_03030 0.88 +0.2
647,598 - -0.2
647,629 + -0.8
647,630 - -1.2
647,630 - -0.4
647,810 + -2.7
647,810 + +0.4
647,810 + -0.6
647,810 + +0.5
647,810 + -0.4
647,811 - -0.1
647,811 - +1.1
647,811 - -0.5
647,811 - -0.4
647,811 - +1.4
647,883 - +0.2
647,927 + -0.1
647,927 + -0.6
647,927 + +1.1
647,927 + +1.1
647,928 - -1.1
647,993 - -1.3
648,087 + -1.9
648,239 + AO353_03035 0.22 -1.6
648,239 + AO353_03035 0.22 -1.6
648,240 - AO353_03035 0.22 -0.4
648,242 + AO353_03035 0.22 -0.5
648,243 - AO353_03035 0.22 +0.1
648,243 - AO353_03035 0.22 -0.6
648,243 - AO353_03035 0.22 -0.8
648,266 + AO353_03035 0.24 -1.0
648,266 + AO353_03035 0.24 -0.1
648,266 + AO353_03035 0.24 +0.7
648,266 + AO353_03035 0.24 +0.2
648,267 - AO353_03035 0.24 -0.9
648,267 - AO353_03035 0.24 +0.0
648,267 - AO353_03035 0.24 -1.5
648,966 + -0.3
649,037 + +0.1
649,064 + +0.7
649,065 - -1.3
649,065 - -0.8
649,097 + -0.5
649,098 - -1.3
649,098 - +0.1
649,098 - +0.5
649,122 + -0.1
649,122 + -0.1
649,122 + -0.6
649,122 + +0.4
649,122 + -0.6
649,123 - -2.2
649,123 - +0.3
649,123 - +0.6
649,438 + AO353_03040 0.41 +0.2
649,438 + AO353_03040 0.41 -0.2
649,438 + AO353_03040 0.41 -1.5
649,438 + AO353_03040 0.41 +0.8
649,438 + AO353_03040 0.41 +1.7
649,438 + AO353_03040 0.41 -1.7
649,438 + AO353_03040 0.41 +0.6
649,439 - AO353_03040 0.42 -1.1
649,439 - AO353_03040 0.42 -1.0
649,439 - AO353_03040 0.42 -0.2
649,439 - AO353_03040 0.42 -2.4
649,439 - AO353_03040 0.42 -1.6
649,439 - AO353_03040 0.42 -0.4
649,439 - AO353_03040 0.42 +0.9
649,439 - AO353_03040 0.42 +0.7
649,449 + AO353_03040 0.43 -0.5
649,450 - AO353_03040 0.43 +0.7
649,450 - AO353_03040 0.43 +0.6
649,459 + AO353_03040 0.44 -1.1
649,459 + AO353_03040 0.44 -0.1
649,488 + AO353_03040 0.48 -0.5
649,488 + AO353_03040 0.48 +0.0
649,488 + AO353_03040 0.48 +0.7
649,488 + AO353_03040 0.48 +0.1
649,488 + AO353_03040 0.48 -0.5
649,489 - AO353_03040 0.48 -0.2
649,489 - AO353_03040 0.48 -0.2
649,489 - AO353_03040 0.48 -1.3
649,756 + AO353_03040 0.83 -0.9
649,756 + AO353_03040 0.83 -0.2
649,757 - AO353_03040 0.83 -0.8
649,757 - AO353_03040 0.83 +0.8
649,757 - AO353_03040 0.83 +0.1
649,848 + +0.3
649,848 + +0.4
649,855 + +0.2
649,856 - -1.0
649,856 - -1.3
649,881 + +0.2
649,881 + +1.7
649,881 + -0.8
649,881 + +0.7
649,882 - +0.1
649,882 - -1.4
649,882 - +0.1
649,882 - -1.1
649,944 + +0.1
649,944 + -1.3
650,007 + AO353_03045 0.12 -0.2
650,007 + AO353_03045 0.12 +0.7
650,007 + AO353_03045 0.12 -0.5
650,007 + AO353_03045 0.12 +1.0
650,007 + AO353_03045 0.12 -0.3
650,007 + AO353_03045 0.12 +0.9
650,008 - AO353_03045 0.12 -1.2
650,008 - AO353_03045 0.12 -1.1
650,008 - AO353_03045 0.12 +0.4
650,008 - AO353_03045 0.12 +0.1

Or see this region's nucleotide sequence