Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01975

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01970 and AO353_01975 are separated by 86 nucleotidesAO353_01975 and AO353_01980 overlap by 4 nucleotides AO353_01970: AO353_01970 - hypothetical protein, at 416,063 to 418,057 _01970 AO353_01975: AO353_01975 - glycosyl transferase, at 418,144 to 419,163 _01975 AO353_01980: AO353_01980 - NAD-dependent dehydratase, at 419,160 to 420,131 _01980 Position (kb) 418 419 420Strain fitness (log2 ratio) -2 -1 0 1 2 3at 417.176 kb on - strand, within AO353_01970at 417.176 kb on - strand, within AO353_01970at 417.176 kb on - strand, within AO353_01970at 417.176 kb on - strand, within AO353_01970at 417.176 kb on - strand, within AO353_01970at 417.421 kb on + strand, within AO353_01970at 417.421 kb on + strand, within AO353_01970at 417.421 kb on + strand, within AO353_01970at 417.422 kb on - strand, within AO353_01970at 417.422 kb on - strand, within AO353_01970at 417.435 kb on + strand, within AO353_01970at 417.454 kb on + strand, within AO353_01970at 417.454 kb on + strand, within AO353_01970at 417.454 kb on + strand, within AO353_01970at 417.561 kb on + strand, within AO353_01970at 417.562 kb on - strand, within AO353_01970at 417.562 kb on - strand, within AO353_01970at 417.562 kb on - strand, within AO353_01970at 417.562 kb on - strand, within AO353_01970at 417.562 kb on - strand, within AO353_01970at 417.642 kb on + strand, within AO353_01970at 417.643 kb on - strand, within AO353_01970at 417.643 kb on - strand, within AO353_01970at 417.643 kb on - strand, within AO353_01970at 417.643 kb on - strand, within AO353_01970at 417.643 kb on - strand, within AO353_01970at 417.662 kb on + strand, within AO353_01970at 417.663 kb on - strand, within AO353_01970at 417.696 kb on + strand, within AO353_01970at 417.696 kb on + strand, within AO353_01970at 417.696 kb on + strand, within AO353_01970at 417.697 kb on - strand, within AO353_01970at 417.697 kb on - strand, within AO353_01970at 417.697 kb on - strand, within AO353_01970at 417.697 kb on - strand, within AO353_01970at 417.742 kb on - strand, within AO353_01970at 417.742 kb on - strand, within AO353_01970at 417.742 kb on - strand, within AO353_01970at 417.748 kb on - strand, within AO353_01970at 417.748 kb on - strand, within AO353_01970at 417.754 kb on + strand, within AO353_01970at 417.755 kb on - strand, within AO353_01970at 417.755 kb on - strand, within AO353_01970at 417.755 kb on - strand, within AO353_01970at 417.782 kb on + strand, within AO353_01970at 417.783 kb on - strand, within AO353_01970at 417.801 kb on - strand, within AO353_01970at 417.823 kb on - strand, within AO353_01970at 417.840 kb on + strand, within AO353_01970at 417.840 kb on + strand, within AO353_01970at 417.841 kb on - strand, within AO353_01970at 417.841 kb on - strandat 417.905 kb on + strandat 417.906 kb on - strandat 417.906 kb on - strandat 417.906 kb on - strandat 417.911 kb on + strandat 417.949 kb on + strandat 417.949 kb on + strandat 417.950 kb on - strandat 418.045 kb on + strandat 418.046 kb on - strandat 418.046 kb on - strandat 418.057 kb on + strandat 418.058 kb on - strandat 418.073 kb on + strandat 418.073 kb on + strandat 418.074 kb on - strandat 418.118 kb on + strandat 418.119 kb on - strandat 418.131 kb on - strandat 418.131 kb on - strandat 418.203 kb on + strandat 418.203 kb on + strandat 418.204 kb on - strandat 418.204 kb on - strandat 418.205 kb on + strandat 418.241 kb on + strandat 418.242 kb on - strandat 418.347 kb on - strand, within AO353_01975at 418.371 kb on - strand, within AO353_01975at 418.371 kb on - strand, within AO353_01975at 418.371 kb on - strand, within AO353_01975at 418.371 kb on - strand, within AO353_01975at 418.371 kb on - strand, within AO353_01975at 418.504 kb on + strand, within AO353_01975at 418.504 kb on + strand, within AO353_01975at 418.504 kb on + strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.507 kb on + strand, within AO353_01975at 418.508 kb on - strand, within AO353_01975at 418.560 kb on + strand, within AO353_01975at 418.560 kb on + strand, within AO353_01975at 418.570 kb on + strand, within AO353_01975at 418.570 kb on + strand, within AO353_01975at 418.571 kb on - strand, within AO353_01975at 418.571 kb on - strand, within AO353_01975at 418.571 kb on - strand, within AO353_01975at 418.640 kb on + strand, within AO353_01975at 418.689 kb on + strand, within AO353_01975at 418.689 kb on + strand, within AO353_01975at 418.689 kb on + strand, within AO353_01975at 418.690 kb on - strand, within AO353_01975at 418.690 kb on - strand, within AO353_01975at 418.723 kb on + strand, within AO353_01975at 418.739 kb on + strand, within AO353_01975at 418.739 kb on + strand, within AO353_01975at 418.740 kb on - strand, within AO353_01975at 418.741 kb on + strand, within AO353_01975at 418.741 kb on + strand, within AO353_01975at 418.742 kb on - strand, within AO353_01975at 418.798 kb on - strand, within AO353_01975at 418.845 kb on + strand, within AO353_01975at 418.845 kb on + strand, within AO353_01975at 418.846 kb on - strand, within AO353_01975at 418.846 kb on - strand, within AO353_01975at 418.876 kb on + strand, within AO353_01975at 418.877 kb on - strand, within AO353_01975at 419.005 kb on + strand, within AO353_01975at 419.006 kb on - strand, within AO353_01975at 419.042 kb on - strand, within AO353_01975at 419.052 kb on + strand, within AO353_01975at 419.053 kb on - strand, within AO353_01975at 419.156 kb on + strandat 419.157 kb on - strandat 419.157 kb on - strandat 419.157 kb on - strandat 419.171 kb on + strandat 419.171 kb on + strandat 419.172 kb on - strandat 419.172 kb on - strandat 419.172 kb on - strandat 419.178 kb on + strandat 419.179 kb on - strandat 419.179 kb on - strandat 419.190 kb on + strandat 419.190 kb on + strandat 419.190 kb on + strandat 419.191 kb on - strandat 419.191 kb on - strandat 419.191 kb on - strandat 419.191 kb on - strandat 419.191 kb on - strandat 419.258 kb on + strand, within AO353_01980at 419.258 kb on + strand, within AO353_01980at 419.258 kb on + strand, within AO353_01980at 419.258 kb on + strand, within AO353_01980at 419.258 kb on + strand, within AO353_01980at 419.258 kb on + strand, within AO353_01980at 419.259 kb on - strand, within AO353_01980at 419.259 kb on - strand, within AO353_01980at 419.261 kb on + strand, within AO353_01980at 419.262 kb on - strand, within AO353_01980at 419.262 kb on - strand, within AO353_01980at 419.322 kb on + strand, within AO353_01980at 419.323 kb on - strand, within AO353_01980at 419.412 kb on + strand, within AO353_01980at 419.412 kb on + strand, within AO353_01980at 419.412 kb on + strand, within AO353_01980at 419.412 kb on + strand, within AO353_01980at 419.413 kb on - strand, within AO353_01980at 419.413 kb on - strand, within AO353_01980at 419.413 kb on - strand, within AO353_01980at 419.474 kb on + strand, within AO353_01980at 419.474 kb on + strand, within AO353_01980at 419.474 kb on + strand, within AO353_01980at 419.474 kb on + strand, within AO353_01980at 419.474 kb on + strand, within AO353_01980at 419.474 kb on + strand, within AO353_01980at 419.475 kb on - strand, within AO353_01980at 419.475 kb on - strand, within AO353_01980at 419.475 kb on - strand, within AO353_01980at 419.489 kb on + strand, within AO353_01980at 419.542 kb on - strand, within AO353_01980at 419.592 kb on + strand, within AO353_01980at 419.592 kb on + strand, within AO353_01980at 419.605 kb on + strand, within AO353_01980at 419.605 kb on + strand, within AO353_01980at 419.606 kb on - strand, within AO353_01980at 419.606 kb on - strand, within AO353_01980at 419.606 kb on - strand, within AO353_01980at 419.606 kb on - strand, within AO353_01980at 419.606 kb on - strand, within AO353_01980at 419.625 kb on + strand, within AO353_01980at 419.626 kb on - strand, within AO353_01980at 419.626 kb on - strand, within AO353_01980at 419.626 kb on - strand, within AO353_01980at 419.734 kb on + strand, within AO353_01980at 419.734 kb on + strand, within AO353_01980at 419.734 kb on + strand, within AO353_01980at 419.735 kb on - strand, within AO353_01980at 419.735 kb on - strand, within AO353_01980at 419.735 kb on - strand, within AO353_01980at 419.735 kb on - strand, within AO353_01980at 419.772 kb on - strand, within AO353_01980at 419.781 kb on + strand, within AO353_01980at 419.782 kb on - strand, within AO353_01980at 419.782 kb on - strand, within AO353_01980at 419.782 kb on - strand, within AO353_01980at 419.782 kb on - strand, within AO353_01980at 419.782 kb on - strand, within AO353_01980at 419.789 kb on + strand, within AO353_01980at 419.850 kb on + strand, within AO353_01980at 419.850 kb on + strand, within AO353_01980at 419.851 kb on - strand, within AO353_01980at 419.851 kb on - strand, within AO353_01980at 419.897 kb on + strand, within AO353_01980at 419.897 kb on + strand, within AO353_01980at 419.897 kb on + strand, within AO353_01980at 419.897 kb on + strand, within AO353_01980at 419.897 kb on + strand, within AO353_01980at 419.897 kb on + strand, within AO353_01980at 419.897 kb on + strand, within AO353_01980at 419.897 kb on + strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.898 kb on - strand, within AO353_01980at 419.901 kb on + strand, within AO353_01980at 419.901 kb on + strand, within AO353_01980at 419.901 kb on + strand, within AO353_01980at 419.901 kb on + strand, within AO353_01980at 419.901 kb on + strand, within AO353_01980at 419.901 kb on + strand, within AO353_01980at 419.902 kb on - strand, within AO353_01980at 419.902 kb on - strand, within AO353_01980at 419.902 kb on - strand, within AO353_01980at 419.902 kb on - strand, within AO353_01980at 419.902 kb on - strand, within AO353_01980at 419.922 kb on + strand, within AO353_01980at 419.922 kb on + strand, within AO353_01980at 419.923 kb on - strandat 419.923 kb on - strand, within AO353_01980at 419.923 kb on - strand, within AO353_01980at 419.923 kb on - strand, within AO353_01980at 420.020 kb on + strand, within AO353_01980at 420.033 kb on + strand, within AO353_01980at 420.033 kb on + strand, within AO353_01980at 420.034 kb on - strandat 420.034 kb on - strandat 420.050 kb on + strandat 420.050 kb on + strandat 420.051 kb on - strandat 420.051 kb on - strandat 420.064 kb on - strandat 420.073 kb on - strandat 420.075 kb on + strandat 420.075 kb on + strandat 420.076 kb on - strandat 420.076 kb on - strandat 420.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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417,176 - AO353_01970 0.56 -0.5
417,176 - AO353_01970 0.56 +0.2
417,176 - AO353_01970 0.56 -0.0
417,176 - AO353_01970 0.56 +0.6
417,176 - AO353_01970 0.56 -0.3
417,421 + AO353_01970 0.68 -0.4
417,421 + AO353_01970 0.68 -0.4
417,421 + AO353_01970 0.68 -1.0
417,422 - AO353_01970 0.68 -1.2
417,422 - AO353_01970 0.68 -0.7
417,435 + AO353_01970 0.69 -1.4
417,454 + AO353_01970 0.70 -0.8
417,454 + AO353_01970 0.70 -0.7
417,454 + AO353_01970 0.70 +0.6
417,561 + AO353_01970 0.75 -1.5
417,562 - AO353_01970 0.75 -0.4
417,562 - AO353_01970 0.75 -0.1
417,562 - AO353_01970 0.75 +0.2
417,562 - AO353_01970 0.75 -1.0
417,562 - AO353_01970 0.75 +1.3
417,642 + AO353_01970 0.79 -1.0
417,643 - AO353_01970 0.79 +0.0
417,643 - AO353_01970 0.79 -0.4
417,643 - AO353_01970 0.79 -0.8
417,643 - AO353_01970 0.79 +1.5
417,643 - AO353_01970 0.79 -1.1
417,662 + AO353_01970 0.80 -1.7
417,663 - AO353_01970 0.80 +0.2
417,696 + AO353_01970 0.82 -0.7
417,696 + AO353_01970 0.82 -1.2
417,696 + AO353_01970 0.82 -1.2
417,697 - AO353_01970 0.82 -1.1
417,697 - AO353_01970 0.82 -1.4
417,697 - AO353_01970 0.82 -0.5
417,697 - AO353_01970 0.82 +1.3
417,742 - AO353_01970 0.84 +1.3
417,742 - AO353_01970 0.84 +0.3
417,742 - AO353_01970 0.84 -0.4
417,748 - AO353_01970 0.84 +0.3
417,748 - AO353_01970 0.84 -1.4
417,754 + AO353_01970 0.85 +0.3
417,755 - AO353_01970 0.85 -2.5
417,755 - AO353_01970 0.85 +2.6
417,755 - AO353_01970 0.85 -1.2
417,782 + AO353_01970 0.86 +0.1
417,783 - AO353_01970 0.86 -1.7
417,801 - AO353_01970 0.87 -0.4
417,823 - AO353_01970 0.88 -0.4
417,840 + AO353_01970 0.89 -0.5
417,840 + AO353_01970 0.89 +0.0
417,841 - AO353_01970 0.89 -0.5
417,841 - +1.6
417,905 + +1.3
417,906 - -0.4
417,906 - -0.7
417,906 - -0.1
417,911 + -1.4
417,949 + +0.0
417,949 + -2.0
417,950 - -1.0
418,045 + -0.6
418,046 - -0.5
418,046 - -1.0
418,057 + -0.5
418,058 - -0.4
418,073 + +0.0
418,073 + -0.1
418,074 - +1.2
418,118 + -0.7
418,119 - -0.0
418,131 - +1.1
418,131 - -1.7
418,203 + +2.1
418,203 + +0.6
418,204 - -1.7
418,204 - -0.7
418,205 + -0.1
418,241 + -1.2
418,242 - -0.7
418,347 - AO353_01975 0.20 -0.5
418,371 - AO353_01975 0.22 -1.2
418,371 - AO353_01975 0.22 -0.2
418,371 - AO353_01975 0.22 -0.7
418,371 - AO353_01975 0.22 +0.5
418,371 - AO353_01975 0.22 -1.5
418,504 + AO353_01975 0.35 -0.4
418,504 + AO353_01975 0.35 -1.8
418,504 + AO353_01975 0.35 +0.0
418,505 - AO353_01975 0.35 -0.2
418,505 - AO353_01975 0.35 -0.4
418,505 - AO353_01975 0.35 +0.0
418,505 - AO353_01975 0.35 -1.4
418,505 - AO353_01975 0.35 -2.1
418,505 - AO353_01975 0.35 -1.0
418,507 + AO353_01975 0.36 +2.6
418,508 - AO353_01975 0.36 -0.4
418,560 + AO353_01975 0.41 -1.4
418,560 + AO353_01975 0.41 -0.7
418,570 + AO353_01975 0.42 +0.8
418,570 + AO353_01975 0.42 -1.0
418,571 - AO353_01975 0.42 +0.0
418,571 - AO353_01975 0.42 +1.9
418,571 - AO353_01975 0.42 -0.4
418,640 + AO353_01975 0.49 -0.2
418,689 + AO353_01975 0.53 -1.0
418,689 + AO353_01975 0.53 +0.3
418,689 + AO353_01975 0.53 -1.5
418,690 - AO353_01975 0.54 +0.3
418,690 - AO353_01975 0.54 -1.1
418,723 + AO353_01975 0.57 -0.7
418,739 + AO353_01975 0.58 +0.3
418,739 + AO353_01975 0.58 -0.4
418,740 - AO353_01975 0.58 -0.7
418,741 + AO353_01975 0.59 -1.5
418,741 + AO353_01975 0.59 +0.9
418,742 - AO353_01975 0.59 -0.4
418,798 - AO353_01975 0.64 +1.6
418,845 + AO353_01975 0.69 -1.4
418,845 + AO353_01975 0.69 +0.6
418,846 - AO353_01975 0.69 -1.8
418,846 - AO353_01975 0.69 +0.0
418,876 + AO353_01975 0.72 +1.0
418,877 - AO353_01975 0.72 -1.4
419,005 + AO353_01975 0.84 +1.2
419,006 - AO353_01975 0.85 +0.0
419,042 - AO353_01975 0.88 -1.2
419,052 + AO353_01975 0.89 -2.1
419,053 - AO353_01975 0.89 -1.7
419,156 + -2.5
419,157 - -0.7
419,157 - +0.5
419,157 - -1.1
419,171 + -1.2
419,171 + -1.0
419,172 - -0.4
419,172 - -0.5
419,172 - -0.5
419,178 + -1.5
419,179 - -1.7
419,179 - +1.2
419,190 + -1.8
419,190 + -1.3
419,190 + +2.2
419,191 - -1.1
419,191 - -1.6
419,191 - +3.2
419,191 - -1.7
419,191 - -1.0
419,258 + AO353_01980 0.10 +0.4
419,258 + AO353_01980 0.10 -0.2
419,258 + AO353_01980 0.10 -0.8
419,258 + AO353_01980 0.10 -0.4
419,258 + AO353_01980 0.10 +0.2
419,258 + AO353_01980 0.10 -0.4
419,259 - AO353_01980 0.10 +0.8
419,259 - AO353_01980 0.10 +0.5
419,261 + AO353_01980 0.10 -1.5
419,262 - AO353_01980 0.10 +0.0
419,262 - AO353_01980 0.10 +0.1
419,322 + AO353_01980 0.17 -1.7
419,323 - AO353_01980 0.17 +0.1
419,412 + AO353_01980 0.26 -0.7
419,412 + AO353_01980 0.26 +0.6
419,412 + AO353_01980 0.26 +0.6
419,412 + AO353_01980 0.26 +0.0
419,413 - AO353_01980 0.26 -0.1
419,413 - AO353_01980 0.26 +0.6
419,413 - AO353_01980 0.26 -1.7
419,474 + AO353_01980 0.32 +1.2
419,474 + AO353_01980 0.32 +0.8
419,474 + AO353_01980 0.32 -0.4
419,474 + AO353_01980 0.32 -0.2
419,474 + AO353_01980 0.32 +0.2
419,474 + AO353_01980 0.32 +0.3
419,475 - AO353_01980 0.32 +0.6
419,475 - AO353_01980 0.32 -1.4
419,475 - AO353_01980 0.32 +1.2
419,489 + AO353_01980 0.34 -2.0
419,542 - AO353_01980 0.39 -0.7
419,592 + AO353_01980 0.44 -1.2
419,592 + AO353_01980 0.44 +3.2
419,605 + AO353_01980 0.46 +0.6
419,605 + AO353_01980 0.46 -1.0
419,606 - AO353_01980 0.46 -0.8
419,606 - AO353_01980 0.46 -0.5
419,606 - AO353_01980 0.46 -2.2
419,606 - AO353_01980 0.46 +0.6
419,606 - AO353_01980 0.46 -0.9
419,625 + AO353_01980 0.48 -0.4
419,626 - AO353_01980 0.48 -0.9
419,626 - AO353_01980 0.48 +0.5
419,626 - AO353_01980 0.48 +1.3
419,734 + AO353_01980 0.59 +0.3
419,734 + AO353_01980 0.59 -0.4
419,734 + AO353_01980 0.59 -1.2
419,735 - AO353_01980 0.59 +0.0
419,735 - AO353_01980 0.59 +1.4
419,735 - AO353_01980 0.59 -0.7
419,735 - AO353_01980 0.59 -1.9
419,772 - AO353_01980 0.63 -0.1
419,781 + AO353_01980 0.64 +0.0
419,782 - AO353_01980 0.64 -0.3
419,782 - AO353_01980 0.64 +0.6
419,782 - AO353_01980 0.64 +0.6
419,782 - AO353_01980 0.64 -1.4
419,782 - AO353_01980 0.64 -0.2
419,789 + AO353_01980 0.65 -2.2
419,850 + AO353_01980 0.71 -0.4
419,850 + AO353_01980 0.71 -1.1
419,851 - AO353_01980 0.71 -0.9
419,851 - AO353_01980 0.71 +1.0
419,897 + AO353_01980 0.76 -0.4
419,897 + AO353_01980 0.76 -1.0
419,897 + AO353_01980 0.76 -0.2
419,897 + AO353_01980 0.76 +0.2
419,897 + AO353_01980 0.76 +0.0
419,897 + AO353_01980 0.76 -0.6
419,897 + AO353_01980 0.76 -0.4
419,897 + AO353_01980 0.76 -0.7
419,898 - AO353_01980 0.76 -0.2
419,898 - AO353_01980 0.76 +0.5
419,898 - AO353_01980 0.76 +2.6
419,898 - AO353_01980 0.76 -0.4
419,898 - AO353_01980 0.76 -0.6
419,898 - AO353_01980 0.76 +0.0
419,898 - AO353_01980 0.76 +2.0
419,898 - AO353_01980 0.76 -0.4
419,898 - AO353_01980 0.76 +0.8
419,898 - AO353_01980 0.76 -1.2
419,898 - AO353_01980 0.76 -0.2
419,898 - AO353_01980 0.76 +0.6
419,898 - AO353_01980 0.76 -0.1
419,898 - AO353_01980 0.76 -0.2
419,901 + AO353_01980 0.76 -0.7
419,901 + AO353_01980 0.76 -0.4
419,901 + AO353_01980 0.76 +0.4
419,901 + AO353_01980 0.76 -1.2
419,901 + AO353_01980 0.76 -0.5
419,901 + AO353_01980 0.76 -1.4
419,902 - AO353_01980 0.76 -1.0
419,902 - AO353_01980 0.76 +1.5
419,902 - AO353_01980 0.76 -1.5
419,902 - AO353_01980 0.76 -1.0
419,902 - AO353_01980 0.76 +1.1
419,922 + AO353_01980 0.78 +0.3
419,922 + AO353_01980 0.78 +2.6
419,923 - -1.0
419,923 - AO353_01980 0.78 -1.1
419,923 - AO353_01980 0.78 +1.6
419,923 - AO353_01980 0.78 +1.4
420,020 + AO353_01980 0.88 -0.4
420,033 + AO353_01980 0.90 -0.1
420,033 + AO353_01980 0.90 -1.2
420,034 - +1.4
420,034 - -1.2
420,050 + -0.4
420,050 + -0.5
420,051 - +2.2
420,051 - +0.6
420,064 - +0.6
420,073 - +2.2
420,075 + +1.6
420,075 + -0.8
420,076 - -0.7
420,076 - -2.0
420,076 - +1.0

Or see this region's nucleotide sequence