Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00455

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00445 and AO353_00450 are separated by 134 nucleotidesAO353_00450 and AO353_00455 are separated by 12 nucleotidesAO353_00455 and AO353_00460 are separated by 197 nucleotides AO353_00445: AO353_00445 - helicase, at 89,168 to 91,858 _00445 AO353_00450: AO353_00450 - 5'-methylthioadenosine phosphorylase, at 91,993 to 92,730 _00450 AO353_00455: AO353_00455 - beta-hexosaminidase, at 92,743 to 93,753 _00455 AO353_00460: AO353_00460 - TetR family transcriptional regulator, at 93,951 to 94,658 _00460 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1 2 3at 91.813 kb on + strandat 91.857 kb on - strandat 91.900 kb on - strandat 91.922 kb on + strandat 91.945 kb on + strandat 91.945 kb on + strandat 91.945 kb on + strandat 91.946 kb on - strandat 91.946 kb on - strandat 91.946 kb on - strandat 91.983 kb on + strandat 91.983 kb on + strandat 91.984 kb on - strandat 91.995 kb on - strandat 91.995 kb on - strandat 92.002 kb on - strandat 92.073 kb on + strand, within AO353_00450at 92.074 kb on - strand, within AO353_00450at 92.074 kb on - strand, within AO353_00450at 92.188 kb on - strand, within AO353_00450at 92.258 kb on + strand, within AO353_00450at 92.258 kb on + strand, within AO353_00450at 92.258 kb on + strand, within AO353_00450at 92.258 kb on + strand, within AO353_00450at 92.258 kb on + strand, within AO353_00450at 92.258 kb on + strand, within AO353_00450at 92.258 kb on + strand, within AO353_00450at 92.258 kb on + strand, within AO353_00450at 92.258 kb on + strand, within AO353_00450at 92.258 kb on + strand, within AO353_00450at 92.259 kb on - strand, within AO353_00450at 92.259 kb on - strand, within AO353_00450at 92.259 kb on - strand, within AO353_00450at 92.260 kb on + strand, within AO353_00450at 92.260 kb on + strand, within AO353_00450at 92.260 kb on + strandat 92.260 kb on + strand, within AO353_00450at 92.260 kb on + strand, within AO353_00450at 92.260 kb on + strand, within AO353_00450at 92.260 kb on + strand, within AO353_00450at 92.260 kb on + strand, within AO353_00450at 92.260 kb on + strand, within AO353_00450at 92.260 kb on + strand, within AO353_00450at 92.260 kb on + strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.261 kb on - strand, within AO353_00450at 92.274 kb on + strand, within AO353_00450at 92.274 kb on + strand, within AO353_00450at 92.274 kb on + strand, within AO353_00450at 92.274 kb on + strand, within AO353_00450at 92.275 kb on - strand, within AO353_00450at 92.275 kb on - strand, within AO353_00450at 92.275 kb on - strand, within AO353_00450at 92.275 kb on - strand, within AO353_00450at 92.276 kb on + strand, within AO353_00450at 92.277 kb on - strand, within AO353_00450at 92.277 kb on - strand, within AO353_00450at 92.277 kb on - strand, within AO353_00450at 92.333 kb on + strand, within AO353_00450at 92.333 kb on + strand, within AO353_00450at 92.334 kb on - strand, within AO353_00450at 92.334 kb on - strand, within AO353_00450at 92.334 kb on - strand, within AO353_00450at 92.339 kb on + strand, within AO353_00450at 92.384 kb on + strand, within AO353_00450at 92.384 kb on + strand, within AO353_00450at 92.384 kb on + strand, within AO353_00450at 92.384 kb on + strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.385 kb on - strand, within AO353_00450at 92.408 kb on + strand, within AO353_00450at 92.409 kb on - strand, within AO353_00450at 92.409 kb on - strand, within AO353_00450at 92.587 kb on + strand, within AO353_00450at 92.587 kb on + strand, within AO353_00450at 92.587 kb on + strand, within AO353_00450at 92.588 kb on - strand, within AO353_00450at 92.588 kb on - strand, within AO353_00450at 92.588 kb on - strand, within AO353_00450at 92.606 kb on + strand, within AO353_00450at 92.606 kb on + strand, within AO353_00450at 92.606 kb on + strand, within AO353_00450at 92.606 kb on + strand, within AO353_00450at 92.607 kb on - strand, within AO353_00450at 92.607 kb on - strand, within AO353_00450at 92.721 kb on - strandat 92.745 kb on - strandat 92.785 kb on - strandat 93.037 kb on + strand, within AO353_00455at 93.038 kb on - strand, within AO353_00455at 93.107 kb on + strand, within AO353_00455at 93.467 kb on + strand, within AO353_00455at 93.468 kb on - strand, within AO353_00455at 93.840 kb on - strandat 93.843 kb on - strandat 93.864 kb on - strandat 93.910 kb on + strandat 93.924 kb on + strandat 93.924 kb on + strandat 93.924 kb on + strandat 93.925 kb on - strandat 93.925 kb on - strandat 93.925 kb on - strandat 93.925 kb on - strandat 93.925 kb on - strandat 93.925 kb on - strandat 93.952 kb on + strandat 93.953 kb on - strandat 93.953 kb on - strandat 93.953 kb on - strandat 93.953 kb on - strandat 94.209 kb on - strand, within AO353_00460at 94.241 kb on - strand, within AO353_00460at 94.241 kb on - strand, within AO353_00460at 94.252 kb on - strand, within AO353_00460at 94.262 kb on - strand, within AO353_00460at 94.262 kb on - strand, within AO353_00460at 94.262 kb on - strand, within AO353_00460at 94.262 kb on - strand, within AO353_00460at 94.335 kb on - strand, within AO353_00460at 94.693 kb on + strandat 94.693 kb on + strandat 94.693 kb on + strandat 94.694 kb on - strandat 94.694 kb on - strandat 94.694 kb on - strandat 94.694 kb on - strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.753 kb on - strandat 94.753 kb on - strandat 94.753 kb on - strandat 94.753 kb on - strandat 94.753 kb on - strandat 94.753 kb on - strandat 94.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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91,813 + -0.2
91,857 - -1.2
91,900 - -0.7
91,922 + +0.2
91,945 + +0.4
91,945 + +1.0
91,945 + -0.0
91,946 - +0.5
91,946 - -2.0
91,946 - +0.1
91,983 + +0.5
91,983 + -1.3
91,984 - +0.2
91,995 - -0.2
91,995 - +0.2
92,002 - -1.6
92,073 + AO353_00450 0.11 -0.2
92,074 - AO353_00450 0.11 +0.1
92,074 - AO353_00450 0.11 +1.2
92,188 - AO353_00450 0.26 +1.5
92,258 + AO353_00450 0.36 -0.0
92,258 + AO353_00450 0.36 -0.2
92,258 + AO353_00450 0.36 -0.0
92,258 + AO353_00450 0.36 +0.1
92,258 + AO353_00450 0.36 +1.3
92,258 + AO353_00450 0.36 -0.0
92,258 + AO353_00450 0.36 -0.2
92,258 + AO353_00450 0.36 +0.1
92,258 + AO353_00450 0.36 +0.7
92,258 + AO353_00450 0.36 +0.3
92,259 - AO353_00450 0.36 -0.3
92,259 - AO353_00450 0.36 +0.7
92,259 - AO353_00450 0.36 -0.3
92,260 + AO353_00450 0.36 +0.5
92,260 + AO353_00450 0.36 -1.3
92,260 + +0.5
92,260 + AO353_00450 0.36 +0.9
92,260 + AO353_00450 0.36 +0.2
92,260 + AO353_00450 0.36 +0.2
92,260 + AO353_00450 0.36 +0.3
92,260 + AO353_00450 0.36 -0.8
92,260 + AO353_00450 0.36 -0.3
92,260 + AO353_00450 0.36 +1.4
92,260 + AO353_00450 0.36 -1.0
92,261 - AO353_00450 0.36 +0.6
92,261 - AO353_00450 0.36 -0.1
92,261 - AO353_00450 0.36 -0.2
92,261 - AO353_00450 0.36 +1.9
92,261 - AO353_00450 0.36 +1.1
92,261 - AO353_00450 0.36 -0.1
92,261 - AO353_00450 0.36 +0.0
92,261 - AO353_00450 0.36 +2.4
92,261 - AO353_00450 0.36 -0.0
92,261 - AO353_00450 0.36 -0.1
92,261 - AO353_00450 0.36 +0.4
92,261 - AO353_00450 0.36 -0.5
92,261 - AO353_00450 0.36 +0.5
92,261 - AO353_00450 0.36 -1.7
92,261 - AO353_00450 0.36 +0.9
92,274 + AO353_00450 0.38 -1.6
92,274 + AO353_00450 0.38 +0.7
92,274 + AO353_00450 0.38 -0.2
92,274 + AO353_00450 0.38 +0.7
92,275 - AO353_00450 0.38 -0.6
92,275 - AO353_00450 0.38 -0.6
92,275 - AO353_00450 0.38 +0.5
92,275 - AO353_00450 0.38 -0.0
92,276 + AO353_00450 0.38 -0.1
92,277 - AO353_00450 0.38 -0.1
92,277 - AO353_00450 0.38 +0.8
92,277 - AO353_00450 0.38 -1.3
92,333 + AO353_00450 0.46 +1.1
92,333 + AO353_00450 0.46 -0.0
92,334 - AO353_00450 0.46 +0.2
92,334 - AO353_00450 0.46 -1.9
92,334 - AO353_00450 0.46 -0.4
92,339 + AO353_00450 0.47 +0.4
92,384 + AO353_00450 0.53 -0.3
92,384 + AO353_00450 0.53 -1.9
92,384 + AO353_00450 0.53 +0.4
92,384 + AO353_00450 0.53 +0.2
92,385 - AO353_00450 0.53 +0.2
92,385 - AO353_00450 0.53 +0.2
92,385 - AO353_00450 0.53 -0.8
92,385 - AO353_00450 0.53 +1.1
92,385 - AO353_00450 0.53 +1.1
92,385 - AO353_00450 0.53 +0.7
92,385 - AO353_00450 0.53 -1.0
92,385 - AO353_00450 0.53 -2.2
92,385 - AO353_00450 0.53 +0.3
92,385 - AO353_00450 0.53 +1.5
92,385 - AO353_00450 0.53 +0.6
92,385 - AO353_00450 0.53 +0.8
92,385 - AO353_00450 0.53 +0.4
92,385 - AO353_00450 0.53 +0.4
92,385 - AO353_00450 0.53 -1.6
92,408 + AO353_00450 0.56 -0.3
92,409 - AO353_00450 0.56 -0.3
92,409 - AO353_00450 0.56 +0.3
92,587 + AO353_00450 0.80 +0.1
92,587 + AO353_00450 0.80 -0.5
92,587 + AO353_00450 0.80 +0.2
92,588 - AO353_00450 0.81 -0.2
92,588 - AO353_00450 0.81 -1.0
92,588 - AO353_00450 0.81 +1.0
92,606 + AO353_00450 0.83 +1.5
92,606 + AO353_00450 0.83 +0.8
92,606 + AO353_00450 0.83 -0.9
92,606 + AO353_00450 0.83 -1.3
92,607 - AO353_00450 0.83 -1.2
92,607 - AO353_00450 0.83 -2.3
92,721 - -0.5
92,745 - +0.7
92,785 - +1.3
93,037 + AO353_00455 0.29 -1.9
93,038 - AO353_00455 0.29 -1.2
93,107 + AO353_00455 0.36 -0.2
93,467 + AO353_00455 0.72 -1.6
93,468 - AO353_00455 0.72 -1.8
93,840 - -1.0
93,843 - -0.5
93,864 - -0.8
93,910 + +0.2
93,924 + -1.1
93,924 + -0.0
93,924 + +0.3
93,925 - -1.2
93,925 - +1.0
93,925 - +1.1
93,925 - +0.3
93,925 - -0.5
93,925 - +0.5
93,952 + +0.1
93,953 - -0.6
93,953 - +0.1
93,953 - -0.1
93,953 - +0.4
94,209 - AO353_00460 0.36 +1.5
94,241 - AO353_00460 0.41 +0.5
94,241 - AO353_00460 0.41 -0.5
94,252 - AO353_00460 0.43 -1.2
94,262 - AO353_00460 0.44 +0.5
94,262 - AO353_00460 0.44 -1.5
94,262 - AO353_00460 0.44 +0.8
94,262 - AO353_00460 0.44 -0.6
94,335 - AO353_00460 0.54 -1.8
94,693 + +1.0
94,693 + +2.5
94,693 + -1.4
94,694 - -1.0
94,694 - -0.8
94,694 - -2.0
94,694 - +0.5
94,752 + -1.3
94,752 + +0.2
94,752 + -0.3
94,752 + -0.5
94,752 + -0.6
94,752 + +0.2
94,752 + -1.0
94,752 + +1.5
94,752 + -0.6
94,752 + -0.5
94,753 - -1.3
94,753 - -0.8
94,753 - -0.9
94,753 - -1.6
94,753 - -0.0
94,753 - -1.0
94,753 - +2.8

Or see this region's nucleotide sequence