Experiment: Ceftazidime 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20870 and ABZR86_RS20875 are separated by 38 nucleotides ABZR86_RS20875 and ABZR86_RS20880 overlap by 2 nucleotides ABZR86_RS20880 and ABZR86_RS20885 are separated by 100 nucleotides
ABZR86_RS20870: ABZR86_RS20870 - alcohol dehydrogenase catalytic domain-containing protein, at 145,193 to 146,230
_RS20870
ABZR86_RS20875: ABZR86_RS20875 - YciI family protein, at 146,269 to 146,835
_RS20875
ABZR86_RS20880: ABZR86_RS20880 - ester cyclase, at 146,834 to 147,382
_RS20880
ABZR86_RS20885: ABZR86_RS20885 - hypothetical protein, at 147,483 to 147,968
_RS20885
Position (kb) 146
147 Strain fitness (log2 ratio) -1
0
1
2 at 145.310 kb on - strand, within ABZR86_RS20870 at 145.749 kb on - strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.836 kb on - strand, within ABZR86_RS20870 at 146.156 kb on + strand at 146.272 kb on + strand at 147.296 kb on + strand, within ABZR86_RS20880 at 147.296 kb on + strand, within ABZR86_RS20880 at 147.296 kb on + strand, within ABZR86_RS20880 at 147.296 kb on + strand, within ABZR86_RS20880 at 147.296 kb on + strand, within ABZR86_RS20880 at 147.347 kb on + strand at 147.347 kb on + strand at 147.347 kb on + strand at 147.348 kb on - strand at 147.348 kb on - strand at 147.439 kb on + strand at 147.498 kb on + strand at 147.499 kb on - strand at 147.499 kb on - strand at 147.591 kb on + strand, within ABZR86_RS20885 at 147.591 kb on + strand, within ABZR86_RS20885 at 147.592 kb on - strand, within ABZR86_RS20885 at 147.592 kb on - strand, within ABZR86_RS20885 at 147.651 kb on + strand, within ABZR86_RS20885 at 147.652 kb on - strand, within ABZR86_RS20885 at 147.652 kb on - strand, within ABZR86_RS20885 at 147.707 kb on + strand, within ABZR86_RS20885 at 147.708 kb on - strand, within ABZR86_RS20885 at 147.708 kb on - strand, within ABZR86_RS20885 at 147.711 kb on + strand, within ABZR86_RS20885 at 147.712 kb on - strand, within ABZR86_RS20885 at 147.712 kb on - strand, within ABZR86_RS20885 at 147.712 kb on - strand, within ABZR86_RS20885 at 147.712 kb on - strand, within ABZR86_RS20885 at 147.808 kb on - strand, within ABZR86_RS20885
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.1 mg/ml remove 145,310 - ABZR86_RS20870 0.11 +0.1 145,749 - ABZR86_RS20870 0.54 +0.3 145,835 + ABZR86_RS20870 0.62 -0.2 145,835 + ABZR86_RS20870 0.62 -0.6 145,835 + ABZR86_RS20870 0.62 -0.7 145,835 + ABZR86_RS20870 0.62 +0.3 145,836 - ABZR86_RS20870 0.62 -0.1 146,156 + +0.4 146,272 + +1.4 147,296 + ABZR86_RS20880 0.84 +0.7 147,296 + ABZR86_RS20880 0.84 +0.1 147,296 + ABZR86_RS20880 0.84 +0.9 147,296 + ABZR86_RS20880 0.84 -0.4 147,296 + ABZR86_RS20880 0.84 +0.3 147,347 + -1.0 147,347 + +0.2 147,347 + +0.4 147,348 - -0.8 147,348 - +0.3 147,439 + -1.2 147,498 + +0.4 147,499 - -0.1 147,499 - +0.4 147,591 + ABZR86_RS20885 0.22 +0.7 147,591 + ABZR86_RS20885 0.22 +0.5 147,592 - ABZR86_RS20885 0.22 -0.0 147,592 - ABZR86_RS20885 0.22 -1.2 147,651 + ABZR86_RS20885 0.35 -0.2 147,652 - ABZR86_RS20885 0.35 +1.3 147,652 - ABZR86_RS20885 0.35 -0.3 147,707 + ABZR86_RS20885 0.46 +0.1 147,708 - ABZR86_RS20885 0.46 +0.1 147,708 - ABZR86_RS20885 0.46 -0.1 147,711 + ABZR86_RS20885 0.47 -1.0 147,712 - ABZR86_RS20885 0.47 +0.6 147,712 - ABZR86_RS20885 0.47 +0.0 147,712 - ABZR86_RS20885 0.47 -0.7 147,712 - ABZR86_RS20885 0.47 +0.4 147,808 - ABZR86_RS20885 0.67 +2.0
Or see this region's nucleotide sequence