Experiment: Ceftazidime 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20255 and ABZR86_RS20260 overlap by 4 nucleotides ABZR86_RS20260 and ABZR86_RS20265 are separated by 1 nucleotides ABZR86_RS20265 and ABZR86_RS20270 are separated by 184 nucleotides
ABZR86_RS20255: ABZR86_RS20255 - flagellar biosynthesis protein FlhF, at 542,726 to 544,072
_RS20255
ABZR86_RS20260: ABZR86_RS20260 - MinD/ParA family protein, at 544,069 to 545,031
_RS20260
ABZR86_RS20265: ABZR86_RS20265 - RNA polymerase sigma factor FliA, at 545,033 to 545,812
_RS20265
ABZR86_RS20270: ABZR86_RS20270 - chemotaxis response regulator CheY, at 545,997 to 546,404
_RS20270
Position (kb) 544
545
546 Strain fitness (log2 ratio) -2
-1
0
1 at 543.401 kb on + strand, within ABZR86_RS20255 at 543.575 kb on + strand, within ABZR86_RS20255 at 543.917 kb on + strand, within ABZR86_RS20255 at 543.918 kb on - strand, within ABZR86_RS20255 at 544.031 kb on + strand at 544.031 kb on + strand at 544.031 kb on + strand at 544.031 kb on + strand at 544.032 kb on - strand at 544.032 kb on - strand at 544.032 kb on - strand at 544.033 kb on + strand at 544.033 kb on + strand at 544.033 kb on + strand at 544.034 kb on - strand at 544.034 kb on - strand at 544.589 kb on + strand, within ABZR86_RS20260 at 544.589 kb on + strand, within ABZR86_RS20260 at 544.589 kb on + strand, within ABZR86_RS20260 at 544.590 kb on - strand, within ABZR86_RS20260 at 544.590 kb on - strand, within ABZR86_RS20260 at 544.590 kb on - strand, within ABZR86_RS20260 at 544.590 kb on - strand, within ABZR86_RS20260 at 544.590 kb on - strand, within ABZR86_RS20260 at 544.819 kb on - strand, within ABZR86_RS20260 at 544.935 kb on + strand at 544.935 kb on + strand at 544.935 kb on + strand at 544.935 kb on + strand at 544.936 kb on - strand at 545.123 kb on + strand, within ABZR86_RS20265 at 545.213 kb on + strand, within ABZR86_RS20265 at 545.213 kb on + strand, within ABZR86_RS20265 at 545.214 kb on - strand, within ABZR86_RS20265 at 545.214 kb on - strand, within ABZR86_RS20265 at 545.214 kb on - strand, within ABZR86_RS20265 at 545.214 kb on - strand, within ABZR86_RS20265 at 545.214 kb on - strand, within ABZR86_RS20265 at 545.246 kb on + strand, within ABZR86_RS20265 at 545.246 kb on + strand, within ABZR86_RS20265 at 545.247 kb on - strand, within ABZR86_RS20265 at 545.247 kb on - strand, within ABZR86_RS20265 at 545.247 kb on - strand, within ABZR86_RS20265 at 545.429 kb on + strand, within ABZR86_RS20265 at 545.430 kb on - strand, within ABZR86_RS20265 at 545.633 kb on + strand, within ABZR86_RS20265 at 545.633 kb on + strand, within ABZR86_RS20265 at 545.634 kb on - strand, within ABZR86_RS20265 at 545.634 kb on - strand, within ABZR86_RS20265 at 545.637 kb on - strand, within ABZR86_RS20265 at 545.637 kb on - strand, within ABZR86_RS20265 at 545.968 kb on + strand at 545.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.1 mg/ml remove 543,401 + ABZR86_RS20255 0.50 +0.5 543,575 + ABZR86_RS20255 0.63 -0.1 543,917 + ABZR86_RS20255 0.88 -0.1 543,918 - ABZR86_RS20255 0.88 +0.2 544,031 + -0.6 544,031 + -0.1 544,031 + +0.7 544,031 + -0.5 544,032 - +1.4 544,032 - +1.5 544,032 - -0.4 544,033 + -0.1 544,033 + -1.2 544,033 + -1.3 544,034 - +0.7 544,034 - +0.4 544,589 + ABZR86_RS20260 0.54 -0.0 544,589 + ABZR86_RS20260 0.54 -0.0 544,589 + ABZR86_RS20260 0.54 -0.2 544,590 - ABZR86_RS20260 0.54 -0.5 544,590 - ABZR86_RS20260 0.54 -1.8 544,590 - ABZR86_RS20260 0.54 -0.6 544,590 - ABZR86_RS20260 0.54 -0.0 544,590 - ABZR86_RS20260 0.54 -0.4 544,819 - ABZR86_RS20260 0.78 +0.0 544,935 + -0.3 544,935 + -0.0 544,935 + -0.5 544,935 + -0.2 544,936 - -0.5 545,123 + ABZR86_RS20265 0.12 -0.8 545,213 + ABZR86_RS20265 0.23 +0.6 545,213 + ABZR86_RS20265 0.23 -0.9 545,214 - ABZR86_RS20265 0.23 -0.4 545,214 - ABZR86_RS20265 0.23 -0.4 545,214 - ABZR86_RS20265 0.23 -0.7 545,214 - ABZR86_RS20265 0.23 -0.2 545,214 - ABZR86_RS20265 0.23 +0.2 545,246 + ABZR86_RS20265 0.27 +0.4 545,246 + ABZR86_RS20265 0.27 -0.6 545,247 - ABZR86_RS20265 0.27 +0.2 545,247 - ABZR86_RS20265 0.27 +0.6 545,247 - ABZR86_RS20265 0.27 +0.3 545,429 + ABZR86_RS20265 0.51 -0.0 545,430 - ABZR86_RS20265 0.51 -0.4 545,633 + ABZR86_RS20265 0.77 -0.2 545,633 + ABZR86_RS20265 0.77 -0.6 545,634 - ABZR86_RS20265 0.77 +0.6 545,634 - ABZR86_RS20265 0.77 +0.3 545,637 - ABZR86_RS20265 0.77 -1.0 545,637 - ABZR86_RS20265 0.77 +0.2 545,968 + -0.0 545,969 - -1.1
Or see this region's nucleotide sequence