Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18225

Experiment: Ceftazidime 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18215 and ABZR86_RS18220 are separated by 168 nucleotidesABZR86_RS18220 and ABZR86_RS18225 overlap by 8 nucleotidesABZR86_RS18225 and ABZR86_RS18230 are separated by 172 nucleotides ABZR86_RS18215: ABZR86_RS18215 - translesion error-prone DNA polymerase V autoproteolytic subunit, at 61,237 to 61,806 _RS18215 ABZR86_RS18220: ABZR86_RS18220 - hypothetical protein, at 61,975 to 62,403 _RS18220 ABZR86_RS18225: ABZR86_RS18225 - helix-turn-helix transcriptional regulator, at 62,396 to 62,608 _RS18225 ABZR86_RS18230: ABZR86_RS18230 - hypothetical protein, at 62,781 to 63,680 _RS18230 Position (kb) 62 63Strain fitness (log2 ratio) -2 -1 0 1at 61.459 kb on + strand, within ABZR86_RS18215at 61.824 kb on + strandat 61.844 kb on + strandat 61.874 kb on - strandat 61.883 kb on + strandat 61.883 kb on + strandat 61.883 kb on + strandat 61.884 kb on - strandat 61.884 kb on - strandat 62.038 kb on + strand, within ABZR86_RS18220at 62.039 kb on - strand, within ABZR86_RS18220at 62.039 kb on - strand, within ABZR86_RS18220at 62.185 kb on + strand, within ABZR86_RS18220at 62.236 kb on + strand, within ABZR86_RS18220at 62.236 kb on + strand, within ABZR86_RS18220at 62.236 kb on + strand, within ABZR86_RS18220at 62.236 kb on + strand, within ABZR86_RS18220at 62.236 kb on + strand, within ABZR86_RS18220at 62.236 kb on + strand, within ABZR86_RS18220at 62.236 kb on + strand, within ABZR86_RS18220at 62.236 kb on + strand, within ABZR86_RS18220at 62.236 kb on + strand, within ABZR86_RS18220at 62.236 kb on + strand, within ABZR86_RS18220at 62.237 kb on - strand, within ABZR86_RS18220at 62.237 kb on - strand, within ABZR86_RS18220at 62.237 kb on - strand, within ABZR86_RS18220at 62.237 kb on - strand, within ABZR86_RS18220at 62.237 kb on - strand, within ABZR86_RS18220at 62.242 kb on + strand, within ABZR86_RS18220at 62.242 kb on + strand, within ABZR86_RS18220at 62.242 kb on + strand, within ABZR86_RS18220at 62.242 kb on + strand, within ABZR86_RS18220at 62.242 kb on + strand, within ABZR86_RS18220at 62.243 kb on - strand, within ABZR86_RS18220at 62.243 kb on - strand, within ABZR86_RS18220at 62.243 kb on - strand, within ABZR86_RS18220at 62.245 kb on + strand, within ABZR86_RS18220at 62.245 kb on + strand, within ABZR86_RS18220at 62.245 kb on + strand, within ABZR86_RS18220at 62.246 kb on - strand, within ABZR86_RS18220at 62.246 kb on - strand, within ABZR86_RS18220at 62.246 kb on - strand, within ABZR86_RS18220at 62.525 kb on + strand, within ABZR86_RS18225at 62.525 kb on + strand, within ABZR86_RS18225at 62.525 kb on + strand, within ABZR86_RS18225at 62.526 kb on - strand, within ABZR86_RS18225at 62.526 kb on - strand, within ABZR86_RS18225at 62.526 kb on - strand, within ABZR86_RS18225at 62.638 kb on + strandat 62.638 kb on + strandat 62.651 kb on + strandat 62.651 kb on + strandat 62.651 kb on + strandat 62.652 kb on - strandat 62.655 kb on + strandat 62.655 kb on + strandat 62.656 kb on - strandat 62.656 kb on - strandat 62.656 kb on - strandat 62.656 kb on - strandat 62.656 kb on - strandat 62.656 kb on - strandat 62.661 kb on + strandat 62.661 kb on + strandat 62.661 kb on + strandat 62.661 kb on + strandat 62.662 kb on - strandat 62.818 kb on + strandat 62.955 kb on - strand, within ABZR86_RS18230at 63.010 kb on + strand, within ABZR86_RS18230at 63.010 kb on + strand, within ABZR86_RS18230at 63.105 kb on + strand, within ABZR86_RS18230at 63.105 kb on + strand, within ABZR86_RS18230at 63.105 kb on + strand, within ABZR86_RS18230at 63.105 kb on + strand, within ABZR86_RS18230at 63.105 kb on + strand, within ABZR86_RS18230at 63.105 kb on + strand, within ABZR86_RS18230at 63.105 kb on + strand, within ABZR86_RS18230at 63.105 kb on + strand, within ABZR86_RS18230at 63.105 kb on + strand, within ABZR86_RS18230at 63.106 kb on - strand, within ABZR86_RS18230at 63.106 kb on - strand, within ABZR86_RS18230at 63.106 kb on - strand, within ABZR86_RS18230at 63.106 kb on - strand, within ABZR86_RS18230at 63.106 kb on - strand, within ABZR86_RS18230at 63.106 kb on - strand, within ABZR86_RS18230at 63.106 kb on - strand, within ABZR86_RS18230at 63.106 kb on - strand, within ABZR86_RS18230at 63.111 kb on + strand, within ABZR86_RS18230at 63.111 kb on + strand, within ABZR86_RS18230at 63.112 kb on - strand, within ABZR86_RS18230at 63.112 kb on - strand, within ABZR86_RS18230at 63.112 kb on - strand, within ABZR86_RS18230at 63.112 kb on - strand, within ABZR86_RS18230at 63.112 kb on - strand, within ABZR86_RS18230at 63.138 kb on + strand, within ABZR86_RS18230at 63.138 kb on + strand, within ABZR86_RS18230at 63.138 kb on + strand, within ABZR86_RS18230at 63.138 kb on + strand, within ABZR86_RS18230at 63.139 kb on - strand, within ABZR86_RS18230at 63.139 kb on - strand, within ABZR86_RS18230at 63.139 kb on - strand, within ABZR86_RS18230at 63.139 kb on - strand, within ABZR86_RS18230at 63.139 kb on - strand, within ABZR86_RS18230at 63.229 kb on - strand, within ABZR86_RS18230at 63.406 kb on - strand, within ABZR86_RS18230at 63.417 kb on - strand, within ABZR86_RS18230at 63.417 kb on - strand, within ABZR86_RS18230at 63.435 kb on + strand, within ABZR86_RS18230at 63.512 kb on + strand, within ABZR86_RS18230at 63.548 kb on + strand, within ABZR86_RS18230at 63.600 kb on + strandat 63.600 kb on + strandat 63.600 kb on + strandat 63.600 kb on + strandat 63.600 kb on + strandat 63.601 kb on - strandat 63.601 kb on - strandat 63.601 kb on - strandat 63.601 kb on - strandat 63.601 kb on - strandat 63.601 kb on - strandat 63.601 kb on - strandat 63.601 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.1 mg/ml
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61,459 + ABZR86_RS18215 0.39 -1.9
61,824 + +1.1
61,844 + -0.5
61,874 - +0.0
61,883 + +0.0
61,883 + +0.4
61,883 + +0.1
61,884 - +0.2
61,884 - -0.1
62,038 + ABZR86_RS18220 0.15 -0.5
62,039 - ABZR86_RS18220 0.15 -0.1
62,039 - ABZR86_RS18220 0.15 -0.3
62,185 + ABZR86_RS18220 0.49 +0.8
62,236 + ABZR86_RS18220 0.61 -0.3
62,236 + ABZR86_RS18220 0.61 -0.3
62,236 + ABZR86_RS18220 0.61 -0.3
62,236 + ABZR86_RS18220 0.61 +0.2
62,236 + ABZR86_RS18220 0.61 +0.4
62,236 + ABZR86_RS18220 0.61 +0.2
62,236 + ABZR86_RS18220 0.61 +0.8
62,236 + ABZR86_RS18220 0.61 +1.3
62,236 + ABZR86_RS18220 0.61 +0.2
62,236 + ABZR86_RS18220 0.61 +0.1
62,237 - ABZR86_RS18220 0.61 -1.4
62,237 - ABZR86_RS18220 0.61 +0.0
62,237 - ABZR86_RS18220 0.61 +0.6
62,237 - ABZR86_RS18220 0.61 +0.3
62,237 - ABZR86_RS18220 0.61 +0.7
62,242 + ABZR86_RS18220 0.62 -0.2
62,242 + ABZR86_RS18220 0.62 -0.5
62,242 + ABZR86_RS18220 0.62 -0.2
62,242 + ABZR86_RS18220 0.62 +0.2
62,242 + ABZR86_RS18220 0.62 -0.1
62,243 - ABZR86_RS18220 0.62 +0.6
62,243 - ABZR86_RS18220 0.62 +0.6
62,243 - ABZR86_RS18220 0.62 -1.1
62,245 + ABZR86_RS18220 0.63 -0.3
62,245 + ABZR86_RS18220 0.63 +0.5
62,245 + ABZR86_RS18220 0.63 +0.2
62,246 - ABZR86_RS18220 0.63 -0.0
62,246 - ABZR86_RS18220 0.63 -0.2
62,246 - ABZR86_RS18220 0.63 -0.1
62,525 + ABZR86_RS18225 0.61 -0.0
62,525 + ABZR86_RS18225 0.61 -0.3
62,525 + ABZR86_RS18225 0.61 +0.3
62,526 - ABZR86_RS18225 0.61 +0.4
62,526 - ABZR86_RS18225 0.61 +0.3
62,526 - ABZR86_RS18225 0.61 -1.6
62,638 + +0.2
62,638 + +0.1
62,651 + +0.2
62,651 + -0.6
62,651 + -0.1
62,652 - +0.2
62,655 + -0.3
62,655 + -0.1
62,656 - -0.5
62,656 - +0.6
62,656 - +0.0
62,656 - +0.1
62,656 - -0.2
62,656 - +0.4
62,661 + +0.4
62,661 + -1.0
62,661 + +0.7
62,661 + +0.8
62,662 - +0.4
62,818 + +0.2
62,955 - ABZR86_RS18230 0.19 -1.0
63,010 + ABZR86_RS18230 0.25 +0.2
63,010 + ABZR86_RS18230 0.25 +0.4
63,105 + ABZR86_RS18230 0.36 -1.0
63,105 + ABZR86_RS18230 0.36 -0.4
63,105 + ABZR86_RS18230 0.36 -0.0
63,105 + ABZR86_RS18230 0.36 -0.2
63,105 + ABZR86_RS18230 0.36 +0.7
63,105 + ABZR86_RS18230 0.36 +0.9
63,105 + ABZR86_RS18230 0.36 +0.2
63,105 + ABZR86_RS18230 0.36 -0.8
63,105 + ABZR86_RS18230 0.36 +0.3
63,106 - ABZR86_RS18230 0.36 -0.2
63,106 - ABZR86_RS18230 0.36 -0.5
63,106 - ABZR86_RS18230 0.36 +1.2
63,106 - ABZR86_RS18230 0.36 -0.5
63,106 - ABZR86_RS18230 0.36 +0.1
63,106 - ABZR86_RS18230 0.36 -0.2
63,106 - ABZR86_RS18230 0.36 +0.3
63,106 - ABZR86_RS18230 0.36 -0.3
63,111 + ABZR86_RS18230 0.37 +0.6
63,111 + ABZR86_RS18230 0.37 -0.1
63,112 - ABZR86_RS18230 0.37 -1.0
63,112 - ABZR86_RS18230 0.37 -0.4
63,112 - ABZR86_RS18230 0.37 +0.0
63,112 - ABZR86_RS18230 0.37 -0.7
63,112 - ABZR86_RS18230 0.37 +0.2
63,138 + ABZR86_RS18230 0.40 -1.8
63,138 + ABZR86_RS18230 0.40 +0.2
63,138 + ABZR86_RS18230 0.40 +0.1
63,138 + ABZR86_RS18230 0.40 +0.6
63,139 - ABZR86_RS18230 0.40 -1.9
63,139 - ABZR86_RS18230 0.40 -0.2
63,139 - ABZR86_RS18230 0.40 +1.6
63,139 - ABZR86_RS18230 0.40 -0.4
63,139 - ABZR86_RS18230 0.40 +0.7
63,229 - ABZR86_RS18230 0.50 -0.3
63,406 - ABZR86_RS18230 0.69 +0.7
63,417 - ABZR86_RS18230 0.71 +0.6
63,417 - ABZR86_RS18230 0.71 -0.1
63,435 + ABZR86_RS18230 0.73 +0.6
63,512 + ABZR86_RS18230 0.81 +0.2
63,548 + ABZR86_RS18230 0.85 +0.2
63,600 + +0.6
63,600 + -0.4
63,600 + -1.2
63,600 + +0.5
63,600 + -0.4
63,601 - -0.4
63,601 - -0.2
63,601 - +0.5
63,601 - +0.2
63,601 - -0.0
63,601 - -0.0
63,601 - +0.8
63,601 - -0.2

Or see this region's nucleotide sequence