Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17065

Experiment: Ceftazidime 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS17060 and ABZR86_RS17065 are separated by 107 nucleotidesABZR86_RS17065 and ABZR86_RS17070 are separated by 125 nucleotides ABZR86_RS17060: ABZR86_RS17060 - zinc-ribbon and DUF3426 domain-containing protein, at 3,855,217 to 3,856,014 _RS17060 ABZR86_RS17065: ABZR86_RS17065 - 50S ribosomal protein L11 methyltransferase, at 3,856,122 to 3,857,024 _RS17065 ABZR86_RS17070: ABZR86_RS17070 - acetyl-CoA carboxylase biotin carboxylase subunit, at 3,857,150 to 3,858,526 _RS17070 Position (kb) 3856 3857 3858Strain fitness (log2 ratio) -2 -1 0 1at 3855.135 kb on - strandat 3855.160 kb on + strandat 3855.161 kb on - strandat 3855.218 kb on + strandat 3855.336 kb on - strand, within ABZR86_RS17060at 3856.010 kb on + strandat 3856.010 kb on + strandat 3856.010 kb on + strandat 3856.010 kb on + strandat 3856.011 kb on - strandat 3856.011 kb on - strandat 3856.020 kb on - strandat 3856.023 kb on + strandat 3856.023 kb on + strandat 3856.023 kb on + strandat 3856.023 kb on + strandat 3856.023 kb on + strandat 3856.024 kb on - strandat 3856.047 kb on + strandat 3856.048 kb on - strandat 3856.048 kb on - strandat 3856.048 kb on - strandat 3856.123 kb on + strandat 3856.124 kb on - strandat 3856.124 kb on - strandat 3856.124 kb on - strandat 3856.124 kb on - strandat 3856.124 kb on - strandat 3856.201 kb on + strandat 3856.201 kb on + strandat 3856.201 kb on + strandat 3856.513 kb on + strand, within ABZR86_RS17065at 3856.667 kb on - strand, within ABZR86_RS17065at 3856.751 kb on - strand, within ABZR86_RS17065at 3857.070 kb on + strandat 3857.070 kb on + strandat 3857.070 kb on + strandat 3857.070 kb on + strandat 3857.070 kb on + strandat 3857.071 kb on - strandat 3857.071 kb on - strandat 3857.071 kb on - strandat 3857.071 kb on - strandat 3857.071 kb on - strandat 3857.071 kb on - strandat 3857.071 kb on - strandat 3857.071 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.1 mg/ml
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3,855,135 - -0.2
3,855,160 + +1.2
3,855,161 - -0.5
3,855,218 + -0.1
3,855,336 - ABZR86_RS17060 0.15 -0.4
3,856,010 + -0.3
3,856,010 + +0.2
3,856,010 + -0.4
3,856,010 + -0.4
3,856,011 - -0.0
3,856,011 - -0.4
3,856,020 - -0.3
3,856,023 + -0.1
3,856,023 + -0.8
3,856,023 + +0.3
3,856,023 + +0.7
3,856,023 + -0.0
3,856,024 - -1.3
3,856,047 + +0.1
3,856,048 - +0.1
3,856,048 - +0.4
3,856,048 - +0.2
3,856,123 + +0.1
3,856,124 - -0.1
3,856,124 - -0.1
3,856,124 - -1.3
3,856,124 - -0.4
3,856,124 - -0.8
3,856,201 + -0.5
3,856,201 + -0.8
3,856,201 + +1.6
3,856,513 + ABZR86_RS17065 0.43 +0.4
3,856,667 - ABZR86_RS17065 0.60 -0.1
3,856,751 - ABZR86_RS17065 0.70 -0.6
3,857,070 + -2.0
3,857,070 + -0.1
3,857,070 + -0.7
3,857,070 + +0.5
3,857,070 + -0.2
3,857,071 - -1.0
3,857,071 - +0.6
3,857,071 - +0.4
3,857,071 - -0.2
3,857,071 - -0.7
3,857,071 - -0.6
3,857,071 - +0.4
3,857,071 - -0.6

Or see this region's nucleotide sequence