Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14005

Experiment: Ceftazidime 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS13995 and ABZR86_RS14000 are separated by 124 nucleotidesABZR86_RS14000 and ABZR86_RS14005 are separated by 55 nucleotidesABZR86_RS14005 and ABZR86_RS14010 overlap by 4 nucleotides ABZR86_RS13995: ABZR86_RS13995 - hypothetical protein, at 3,118,531 to 3,118,740 _RS13995 ABZR86_RS14000: ABZR86_RS14000 - phage portal protein, at 3,118,865 to 3,119,497 _RS14000 ABZR86_RS14005: ABZR86_RS14005 - hypothetical protein, at 3,119,553 to 3,120,041 _RS14005 ABZR86_RS14010: ABZR86_RS14010 - RHS repeat-associated core domain-containing protein, at 3,120,038 to 3,124,669 _RS14010 Position (kb) 3119 3120 3121Strain fitness (log2 ratio) -2 -1 0 1at 3118.556 kb on + strand, within ABZR86_RS13995at 3118.557 kb on - strand, within ABZR86_RS13995at 3118.564 kb on + strand, within ABZR86_RS13995at 3118.565 kb on - strand, within ABZR86_RS13995at 3118.565 kb on - strand, within ABZR86_RS13995at 3118.594 kb on + strand, within ABZR86_RS13995at 3118.595 kb on - strand, within ABZR86_RS13995at 3118.595 kb on - strand, within ABZR86_RS13995at 3118.666 kb on + strand, within ABZR86_RS13995at 3118.666 kb on + strand, within ABZR86_RS13995at 3118.666 kb on + strand, within ABZR86_RS13995at 3118.667 kb on - strand, within ABZR86_RS13995at 3118.667 kb on - strand, within ABZR86_RS13995at 3118.713 kb on - strand, within ABZR86_RS13995at 3118.757 kb on + strandat 3118.758 kb on - strandat 3118.868 kb on + strandat 3118.868 kb on + strandat 3118.958 kb on + strand, within ABZR86_RS14000at 3118.958 kb on + strand, within ABZR86_RS14000at 3118.958 kb on + strand, within ABZR86_RS14000at 3118.958 kb on + strand, within ABZR86_RS14000at 3118.959 kb on - strand, within ABZR86_RS14000at 3118.973 kb on + strand, within ABZR86_RS14000at 3118.973 kb on + strand, within ABZR86_RS14000at 3118.978 kb on - strand, within ABZR86_RS14000at 3119.033 kb on + strand, within ABZR86_RS14000at 3119.033 kb on + strand, within ABZR86_RS14000at 3119.033 kb on + strand, within ABZR86_RS14000at 3119.034 kb on - strand, within ABZR86_RS14000at 3119.036 kb on + strand, within ABZR86_RS14000at 3119.036 kb on + strand, within ABZR86_RS14000at 3119.037 kb on - strand, within ABZR86_RS14000at 3119.037 kb on - strand, within ABZR86_RS14000at 3119.037 kb on - strand, within ABZR86_RS14000at 3119.060 kb on + strand, within ABZR86_RS14000at 3119.060 kb on + strand, within ABZR86_RS14000at 3119.060 kb on + strand, within ABZR86_RS14000at 3119.060 kb on + strand, within ABZR86_RS14000at 3119.060 kb on + strand, within ABZR86_RS14000at 3119.060 kb on + strand, within ABZR86_RS14000at 3119.060 kb on + strand, within ABZR86_RS14000at 3119.060 kb on + strand, within ABZR86_RS14000at 3119.060 kb on + strand, within ABZR86_RS14000at 3119.061 kb on - strand, within ABZR86_RS14000at 3119.061 kb on - strand, within ABZR86_RS14000at 3119.069 kb on + strand, within ABZR86_RS14000at 3119.069 kb on + strand, within ABZR86_RS14000at 3119.069 kb on + strand, within ABZR86_RS14000at 3119.069 kb on + strand, within ABZR86_RS14000at 3119.069 kb on + strand, within ABZR86_RS14000at 3119.070 kb on - strand, within ABZR86_RS14000at 3119.165 kb on - strand, within ABZR86_RS14000at 3119.168 kb on + strand, within ABZR86_RS14000at 3119.168 kb on + strand, within ABZR86_RS14000at 3119.168 kb on + strand, within ABZR86_RS14000at 3119.168 kb on + strand, within ABZR86_RS14000at 3119.169 kb on - strand, within ABZR86_RS14000at 3119.169 kb on - strand, within ABZR86_RS14000at 3119.169 kb on - strand, within ABZR86_RS14000at 3119.169 kb on - strand, within ABZR86_RS14000at 3119.220 kb on + strand, within ABZR86_RS14000at 3119.220 kb on + strand, within ABZR86_RS14000at 3119.221 kb on - strand, within ABZR86_RS14000at 3119.287 kb on + strand, within ABZR86_RS14000at 3119.287 kb on + strand, within ABZR86_RS14000at 3119.287 kb on + strand, within ABZR86_RS14000at 3119.288 kb on - strand, within ABZR86_RS14000at 3119.288 kb on - strand, within ABZR86_RS14000at 3119.549 kb on + strandat 3119.549 kb on + strandat 3119.550 kb on - strandat 3119.550 kb on - strandat 3119.554 kb on + strandat 3119.641 kb on - strand, within ABZR86_RS14005at 3119.679 kb on + strand, within ABZR86_RS14005at 3119.746 kb on - strand, within ABZR86_RS14005at 3119.750 kb on + strand, within ABZR86_RS14005at 3119.751 kb on - strand, within ABZR86_RS14005at 3119.764 kb on + strand, within ABZR86_RS14005at 3119.764 kb on + strand, within ABZR86_RS14005at 3119.765 kb on - strand, within ABZR86_RS14005at 3119.765 kb on - strand, within ABZR86_RS14005at 3119.765 kb on - strand, within ABZR86_RS14005at 3119.765 kb on - strand, within ABZR86_RS14005at 3119.765 kb on - strand, within ABZR86_RS14005at 3119.765 kb on - strand, within ABZR86_RS14005at 3119.885 kb on + strand, within ABZR86_RS14005at 3119.889 kb on + strand, within ABZR86_RS14005at 3119.890 kb on - strand, within ABZR86_RS14005at 3119.933 kb on + strand, within ABZR86_RS14005at 3119.934 kb on - strand, within ABZR86_RS14005at 3119.934 kb on - strand, within ABZR86_RS14005at 3119.940 kb on + strand, within ABZR86_RS14005at 3119.987 kb on + strand, within ABZR86_RS14005at 3119.988 kb on - strand, within ABZR86_RS14005at 3119.988 kb on - strand, within ABZR86_RS14005at 3119.995 kb on + strandat 3119.995 kb on + strandat 3119.996 kb on - strandat 3119.998 kb on - strandat 3120.023 kb on + strandat 3120.155 kb on + strandat 3120.180 kb on + strandat 3120.180 kb on + strandat 3120.181 kb on - strandat 3120.181 kb on - strandat 3120.185 kb on - strandat 3120.185 kb on - strandat 3120.210 kb on + strandat 3120.211 kb on - strandat 3120.277 kb on + strandat 3120.277 kb on + strandat 3120.278 kb on - strandat 3120.294 kb on + strandat 3120.295 kb on - strandat 3120.295 kb on - strandat 3120.315 kb on + strandat 3120.315 kb on + strandat 3120.316 kb on - strandat 3120.388 kb on + strandat 3120.389 kb on - strandat 3120.398 kb on + strandat 3120.399 kb on - strandat 3120.435 kb on + strandat 3120.435 kb on + strandat 3120.435 kb on + strandat 3120.436 kb on - strandat 3120.519 kb on - strand, within ABZR86_RS14010at 3120.519 kb on - strand, within ABZR86_RS14010at 3120.540 kb on + strand, within ABZR86_RS14010at 3120.540 kb on + strand, within ABZR86_RS14010at 3120.541 kb on - strand, within ABZR86_RS14010at 3120.541 kb on - strand, within ABZR86_RS14010at 3120.541 kb on - strand, within ABZR86_RS14010at 3120.541 kb on - strand, within ABZR86_RS14010at 3120.541 kb on - strand, within ABZR86_RS14010at 3120.598 kb on - strand, within ABZR86_RS14010at 3120.618 kb on + strand, within ABZR86_RS14010at 3120.618 kb on + strand, within ABZR86_RS14010at 3120.618 kb on + strand, within ABZR86_RS14010at 3120.618 kb on + strand, within ABZR86_RS14010at 3120.618 kb on + strand, within ABZR86_RS14010at 3120.619 kb on - strand, within ABZR86_RS14010at 3120.622 kb on + strand, within ABZR86_RS14010at 3120.622 kb on + strand, within ABZR86_RS14010at 3120.622 kb on + strand, within ABZR86_RS14010at 3120.639 kb on + strand, within ABZR86_RS14010at 3120.661 kb on + strand, within ABZR86_RS14010at 3120.661 kb on + strand, within ABZR86_RS14010at 3120.661 kb on + strand, within ABZR86_RS14010at 3120.662 kb on - strand, within ABZR86_RS14010at 3120.662 kb on - strand, within ABZR86_RS14010at 3120.663 kb on + strand, within ABZR86_RS14010at 3120.664 kb on - strand, within ABZR86_RS14010at 3120.664 kb on - strand, within ABZR86_RS14010at 3120.693 kb on + strand, within ABZR86_RS14010at 3120.694 kb on - strand, within ABZR86_RS14010at 3120.742 kb on - strand, within ABZR86_RS14010at 3120.755 kb on + strand, within ABZR86_RS14010at 3120.816 kb on + strand, within ABZR86_RS14010at 3120.816 kb on + strand, within ABZR86_RS14010at 3120.858 kb on - strand, within ABZR86_RS14010at 3120.882 kb on + strand, within ABZR86_RS14010at 3120.883 kb on - strand, within ABZR86_RS14010at 3120.922 kb on + strand, within ABZR86_RS14010at 3120.923 kb on - strand, within ABZR86_RS14010at 3120.923 kb on - strand, within ABZR86_RS14010at 3120.923 kb on - strand, within ABZR86_RS14010at 3120.933 kb on + strand, within ABZR86_RS14010at 3121.002 kb on + strand, within ABZR86_RS14010at 3121.002 kb on + strand, within ABZR86_RS14010at 3121.003 kb on - strand, within ABZR86_RS14010at 3121.003 kb on - strand, within ABZR86_RS14010at 3121.006 kb on + strand, within ABZR86_RS14010at 3121.006 kb on + strand, within ABZR86_RS14010at 3121.006 kb on + strand, within ABZR86_RS14010at 3121.007 kb on - strand, within ABZR86_RS14010at 3121.007 kb on - strand, within ABZR86_RS14010at 3121.007 kb on - strand, within ABZR86_RS14010at 3121.009 kb on - strand, within ABZR86_RS14010at 3121.009 kb on - strand, within ABZR86_RS14010

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.1 mg/ml
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3,118,556 + ABZR86_RS13995 0.12 +0.7
3,118,557 - ABZR86_RS13995 0.12 -0.5
3,118,564 + ABZR86_RS13995 0.16 -0.1
3,118,565 - ABZR86_RS13995 0.16 +0.5
3,118,565 - ABZR86_RS13995 0.16 +0.6
3,118,594 + ABZR86_RS13995 0.30 +1.0
3,118,595 - ABZR86_RS13995 0.30 +1.0
3,118,595 - ABZR86_RS13995 0.30 +0.5
3,118,666 + ABZR86_RS13995 0.64 +0.4
3,118,666 + ABZR86_RS13995 0.64 +0.6
3,118,666 + ABZR86_RS13995 0.64 +0.0
3,118,667 - ABZR86_RS13995 0.65 -0.4
3,118,667 - ABZR86_RS13995 0.65 +0.2
3,118,713 - ABZR86_RS13995 0.87 -0.1
3,118,757 + -0.3
3,118,758 - +0.2
3,118,868 + +1.2
3,118,868 + +0.5
3,118,958 + ABZR86_RS14000 0.15 +0.1
3,118,958 + ABZR86_RS14000 0.15 +0.3
3,118,958 + ABZR86_RS14000 0.15 +0.1
3,118,958 + ABZR86_RS14000 0.15 +0.4
3,118,959 - ABZR86_RS14000 0.15 +0.6
3,118,973 + ABZR86_RS14000 0.17 +0.2
3,118,973 + ABZR86_RS14000 0.17 +0.1
3,118,978 - ABZR86_RS14000 0.18 +0.6
3,119,033 + ABZR86_RS14000 0.27 +0.3
3,119,033 + ABZR86_RS14000 0.27 +0.4
3,119,033 + ABZR86_RS14000 0.27 -0.2
3,119,034 - ABZR86_RS14000 0.27 +1.2
3,119,036 + ABZR86_RS14000 0.27 +0.2
3,119,036 + ABZR86_RS14000 0.27 +0.2
3,119,037 - ABZR86_RS14000 0.27 -0.0
3,119,037 - ABZR86_RS14000 0.27 +0.3
3,119,037 - ABZR86_RS14000 0.27 +0.0
3,119,060 + ABZR86_RS14000 0.31 +0.5
3,119,060 + ABZR86_RS14000 0.31 +0.7
3,119,060 + ABZR86_RS14000 0.31 +0.4
3,119,060 + ABZR86_RS14000 0.31 +0.0
3,119,060 + ABZR86_RS14000 0.31 +0.1
3,119,060 + ABZR86_RS14000 0.31 +0.3
3,119,060 + ABZR86_RS14000 0.31 +1.7
3,119,060 + ABZR86_RS14000 0.31 +1.0
3,119,060 + ABZR86_RS14000 0.31 +0.2
3,119,061 - ABZR86_RS14000 0.31 +0.3
3,119,061 - ABZR86_RS14000 0.31 +0.2
3,119,069 + ABZR86_RS14000 0.32 -0.1
3,119,069 + ABZR86_RS14000 0.32 +0.5
3,119,069 + ABZR86_RS14000 0.32 +0.2
3,119,069 + ABZR86_RS14000 0.32 +0.5
3,119,069 + ABZR86_RS14000 0.32 +0.5
3,119,070 - ABZR86_RS14000 0.32 -0.1
3,119,165 - ABZR86_RS14000 0.47 +0.3
3,119,168 + ABZR86_RS14000 0.48 +0.7
3,119,168 + ABZR86_RS14000 0.48 +0.2
3,119,168 + ABZR86_RS14000 0.48 +0.7
3,119,168 + ABZR86_RS14000 0.48 +0.3
3,119,169 - ABZR86_RS14000 0.48 -0.2
3,119,169 - ABZR86_RS14000 0.48 +0.1
3,119,169 - ABZR86_RS14000 0.48 +0.2
3,119,169 - ABZR86_RS14000 0.48 -0.4
3,119,220 + ABZR86_RS14000 0.56 +0.8
3,119,220 + ABZR86_RS14000 0.56 +0.1
3,119,221 - ABZR86_RS14000 0.56 -0.1
3,119,287 + ABZR86_RS14000 0.67 +0.1
3,119,287 + ABZR86_RS14000 0.67 +0.4
3,119,287 + ABZR86_RS14000 0.67 +0.4
3,119,288 - ABZR86_RS14000 0.67 -2.1
3,119,288 - ABZR86_RS14000 0.67 +1.0
3,119,549 + -0.1
3,119,549 + +0.7
3,119,550 - -0.2
3,119,550 - +0.4
3,119,554 + +0.4
3,119,641 - ABZR86_RS14005 0.18 -0.3
3,119,679 + ABZR86_RS14005 0.26 -0.0
3,119,746 - ABZR86_RS14005 0.39 +0.4
3,119,750 + ABZR86_RS14005 0.40 +0.5
3,119,751 - ABZR86_RS14005 0.40 +0.0
3,119,764 + ABZR86_RS14005 0.43 +0.3
3,119,764 + ABZR86_RS14005 0.43 +0.7
3,119,765 - ABZR86_RS14005 0.43 +0.5
3,119,765 - ABZR86_RS14005 0.43 +0.2
3,119,765 - ABZR86_RS14005 0.43 +0.0
3,119,765 - ABZR86_RS14005 0.43 -0.4
3,119,765 - ABZR86_RS14005 0.43 +0.9
3,119,765 - ABZR86_RS14005 0.43 +0.6
3,119,885 + ABZR86_RS14005 0.68 +0.5
3,119,889 + ABZR86_RS14005 0.69 -0.3
3,119,890 - ABZR86_RS14005 0.69 +0.1
3,119,933 + ABZR86_RS14005 0.78 +0.6
3,119,934 - ABZR86_RS14005 0.78 -0.3
3,119,934 - ABZR86_RS14005 0.78 +0.4
3,119,940 + ABZR86_RS14005 0.79 +0.4
3,119,987 + ABZR86_RS14005 0.89 +0.6
3,119,988 - ABZR86_RS14005 0.89 +0.2
3,119,988 - ABZR86_RS14005 0.89 -0.2
3,119,995 + +0.6
3,119,995 + +0.1
3,119,996 - +0.5
3,119,998 - -0.2
3,120,023 + +0.5
3,120,155 + +0.4
3,120,180 + +1.1
3,120,180 + +0.7
3,120,181 - +0.3
3,120,181 - +0.3
3,120,185 - +0.8
3,120,185 - +0.2
3,120,210 + +0.3
3,120,211 - +0.2
3,120,277 + +0.3
3,120,277 + -0.0
3,120,278 - -0.3
3,120,294 + +0.8
3,120,295 - +0.6
3,120,295 - +0.5
3,120,315 + -2.0
3,120,315 + +0.3
3,120,316 - -0.0
3,120,388 + +0.6
3,120,389 - +0.0
3,120,398 + +0.3
3,120,399 - -0.1
3,120,435 + +0.7
3,120,435 + +0.3
3,120,435 + +0.6
3,120,436 - +0.2
3,120,519 - ABZR86_RS14010 0.10 -0.5
3,120,519 - ABZR86_RS14010 0.10 +0.3
3,120,540 + ABZR86_RS14010 0.11 +0.0
3,120,540 + ABZR86_RS14010 0.11 +1.4
3,120,541 - ABZR86_RS14010 0.11 +0.1
3,120,541 - ABZR86_RS14010 0.11 -0.2
3,120,541 - ABZR86_RS14010 0.11 +0.1
3,120,541 - ABZR86_RS14010 0.11 -0.5
3,120,541 - ABZR86_RS14010 0.11 -0.0
3,120,598 - ABZR86_RS14010 0.12 +0.4
3,120,618 + ABZR86_RS14010 0.13 -0.2
3,120,618 + ABZR86_RS14010 0.13 -1.3
3,120,618 + ABZR86_RS14010 0.13 +0.3
3,120,618 + ABZR86_RS14010 0.13 +0.2
3,120,618 + ABZR86_RS14010 0.13 -0.2
3,120,619 - ABZR86_RS14010 0.13 +0.6
3,120,622 + ABZR86_RS14010 0.13 +0.4
3,120,622 + ABZR86_RS14010 0.13 +0.8
3,120,622 + ABZR86_RS14010 0.13 +0.4
3,120,639 + ABZR86_RS14010 0.13 +0.3
3,120,661 + ABZR86_RS14010 0.13 +0.3
3,120,661 + ABZR86_RS14010 0.13 +0.2
3,120,661 + ABZR86_RS14010 0.13 +0.1
3,120,662 - ABZR86_RS14010 0.13 +0.4
3,120,662 - ABZR86_RS14010 0.13 +0.5
3,120,663 + ABZR86_RS14010 0.13 +0.5
3,120,664 - ABZR86_RS14010 0.14 -0.1
3,120,664 - ABZR86_RS14010 0.14 +0.9
3,120,693 + ABZR86_RS14010 0.14 +0.3
3,120,694 - ABZR86_RS14010 0.14 -1.0
3,120,742 - ABZR86_RS14010 0.15 +0.1
3,120,755 + ABZR86_RS14010 0.15 +0.8
3,120,816 + ABZR86_RS14010 0.17 +1.3
3,120,816 + ABZR86_RS14010 0.17 +0.4
3,120,858 - ABZR86_RS14010 0.18 +0.3
3,120,882 + ABZR86_RS14010 0.18 +0.5
3,120,883 - ABZR86_RS14010 0.18 +0.5
3,120,922 + ABZR86_RS14010 0.19 +0.6
3,120,923 - ABZR86_RS14010 0.19 +0.7
3,120,923 - ABZR86_RS14010 0.19 +0.2
3,120,923 - ABZR86_RS14010 0.19 +0.1
3,120,933 + ABZR86_RS14010 0.19 -1.1
3,121,002 + ABZR86_RS14010 0.21 +1.4
3,121,002 + ABZR86_RS14010 0.21 -0.1
3,121,003 - ABZR86_RS14010 0.21 +0.4
3,121,003 - ABZR86_RS14010 0.21 +0.3
3,121,006 + ABZR86_RS14010 0.21 +0.3
3,121,006 + ABZR86_RS14010 0.21 +0.1
3,121,006 + ABZR86_RS14010 0.21 +0.7
3,121,007 - ABZR86_RS14010 0.21 +0.2
3,121,007 - ABZR86_RS14010 0.21 +0.0
3,121,007 - ABZR86_RS14010 0.21 +0.4
3,121,009 - ABZR86_RS14010 0.21 +0.7
3,121,009 - ABZR86_RS14010 0.21 +0.7

Or see this region's nucleotide sequence