Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10825

Experiment: Ceftazidime 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10815 and ABZR86_RS10820 are separated by 15 nucleotidesABZR86_RS10820 and ABZR86_RS10825 are separated by 24 nucleotidesABZR86_RS10825 and ABZR86_RS10830 overlap by 8 nucleotides ABZR86_RS10815: ABZR86_RS10815 - protein TolR, at 2,401,526 to 2,401,972 _RS10815 ABZR86_RS10820: ABZR86_RS10820 - protein TolQ, at 2,401,988 to 2,402,674 _RS10820 ABZR86_RS10825: ABZR86_RS10825 - tol-pal system-associated acyl-CoA thioesterase, at 2,402,699 to 2,403,133 _RS10825 ABZR86_RS10830: ABZR86_RS10830 - Holliday junction branch migration DNA helicase RuvB, at 2,403,126 to 2,404,172 _RS10830 Position (kb) 2402 2403 2404Strain fitness (log2 ratio) -2 -1 0 1at 2402.700 kb on + strandat 2402.701 kb on - strandat 2402.714 kb on + strandat 2402.876 kb on + strand, within ABZR86_RS10825at 2403.030 kb on + strand, within ABZR86_RS10825at 2403.042 kb on + strand, within ABZR86_RS10825at 2403.043 kb on - strand, within ABZR86_RS10825at 2403.075 kb on + strand, within ABZR86_RS10825at 2403.076 kb on - strand, within ABZR86_RS10825at 2403.076 kb on - strand, within ABZR86_RS10825at 2403.478 kb on + strand, within ABZR86_RS10830at 2403.479 kb on - strand, within ABZR86_RS10830at 2403.625 kb on + strand, within ABZR86_RS10830at 2404.045 kb on + strand, within ABZR86_RS10830

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.1 mg/ml
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2,402,700 + -0.9
2,402,701 - +0.2
2,402,714 + -0.6
2,402,876 + ABZR86_RS10825 0.41 -0.0
2,403,030 + ABZR86_RS10825 0.76 -1.1
2,403,042 + ABZR86_RS10825 0.79 -0.3
2,403,043 - ABZR86_RS10825 0.79 -0.3
2,403,075 + ABZR86_RS10825 0.86 -0.7
2,403,076 - ABZR86_RS10825 0.87 +0.2
2,403,076 - ABZR86_RS10825 0.87 -0.0
2,403,478 + ABZR86_RS10830 0.34 -0.4
2,403,479 - ABZR86_RS10830 0.34 +0.6
2,403,625 + ABZR86_RS10830 0.48 -2.4
2,404,045 + ABZR86_RS10830 0.88 -1.3

Or see this region's nucleotide sequence