Experiment: Ceftazidime 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS03640 and ABZR86_RS03645 are separated by 2 nucleotides ABZR86_RS03645 and ABZR86_RS03650 are separated by 435 nucleotides ABZR86_RS03650 and ABZR86_RS03655 are separated by 91 nucleotides
ABZR86_RS03640: ABZR86_RS03640 - DUF488 family protein, at 792,886 to 793,440
_RS03640
ABZR86_RS03645: ABZR86_RS03645 - DUF2945 domain-containing protein, at 793,443 to 793,664
_RS03645
ABZR86_RS03650: ABZR86_RS03650 - TonB-dependent receptor, at 794,100 to 796,928
_RS03650
ABZR86_RS03655: ABZR86_RS03655 - glycoside hydrolase family 27 protein, at 797,020 to 798,222
_RS03655
Position (kb) 794
795
796
797 Strain fitness (log2 ratio) -1
0
1 at 793.444 kb on + strand at 793.481 kb on + strand, within ABZR86_RS03645 at 793.522 kb on + strand, within ABZR86_RS03645 at 793.565 kb on - strand, within ABZR86_RS03645 at 793.875 kb on - strand at 794.795 kb on + strand, within ABZR86_RS03650 at 794.838 kb on + strand, within ABZR86_RS03650 at 794.838 kb on + strand, within ABZR86_RS03650 at 794.839 kb on - strand, within ABZR86_RS03650 at 794.839 kb on - strand, within ABZR86_RS03650 at 794.924 kb on + strand, within ABZR86_RS03650 at 794.925 kb on - strand, within ABZR86_RS03650 at 794.965 kb on - strand, within ABZR86_RS03650 at 795.060 kb on + strand, within ABZR86_RS03650 at 795.096 kb on + strand, within ABZR86_RS03650 at 795.156 kb on + strand, within ABZR86_RS03650 at 795.156 kb on + strand, within ABZR86_RS03650 at 795.193 kb on - strand, within ABZR86_RS03650 at 795.223 kb on - strand, within ABZR86_RS03650 at 795.357 kb on - strand, within ABZR86_RS03650 at 795.408 kb on + strand, within ABZR86_RS03650 at 795.408 kb on + strand, within ABZR86_RS03650 at 795.409 kb on - strand, within ABZR86_RS03650 at 795.645 kb on + strand, within ABZR86_RS03650 at 795.747 kb on + strand, within ABZR86_RS03650 at 795.793 kb on - strand, within ABZR86_RS03650 at 795.880 kb on - strand, within ABZR86_RS03650 at 796.071 kb on + strand, within ABZR86_RS03650 at 796.107 kb on + strand, within ABZR86_RS03650 at 796.108 kb on - strand, within ABZR86_RS03650 at 796.230 kb on + strand, within ABZR86_RS03650 at 796.230 kb on + strand, within ABZR86_RS03650 at 796.287 kb on + strand, within ABZR86_RS03650 at 796.289 kb on + strand, within ABZR86_RS03650 at 796.290 kb on - strand, within ABZR86_RS03650 at 796.290 kb on - strand, within ABZR86_RS03650 at 796.290 kb on - strand, within ABZR86_RS03650 at 796.290 kb on - strand, within ABZR86_RS03650 at 796.290 kb on - strand, within ABZR86_RS03650 at 796.302 kb on + strand, within ABZR86_RS03650 at 796.302 kb on + strand, within ABZR86_RS03650 at 796.303 kb on - strand, within ABZR86_RS03650 at 796.303 kb on - strand, within ABZR86_RS03650 at 796.341 kb on + strand, within ABZR86_RS03650 at 796.492 kb on - strand, within ABZR86_RS03650 at 796.546 kb on - strand, within ABZR86_RS03650 at 796.647 kb on + strand at 796.648 kb on - strand at 796.648 kb on - strand at 796.650 kb on + strand at 796.651 kb on - strand at 796.684 kb on - strand at 796.752 kb on + strand at 796.848 kb on + strand at 796.849 kb on - strand at 796.849 kb on - strand at 796.857 kb on + strand at 796.857 kb on + strand at 796.859 kb on + strand at 796.969 kb on - strand at 797.028 kb on + strand at 797.029 kb on - strand at 797.029 kb on - strand at 797.029 kb on - strand at 797.037 kb on + strand at 797.057 kb on + strand at 797.089 kb on + strand at 797.356 kb on + strand, within ABZR86_RS03655 at 797.357 kb on - strand, within ABZR86_RS03655 at 797.357 kb on - strand, within ABZR86_RS03655 at 797.409 kb on + strand, within ABZR86_RS03655 at 797.503 kb on + strand, within ABZR86_RS03655 at 797.602 kb on + strand, within ABZR86_RS03655 at 797.602 kb on + strand, within ABZR86_RS03655 at 797.704 kb on + strand, within ABZR86_RS03655 at 797.704 kb on + strand, within ABZR86_RS03655 at 797.705 kb on - strand, within ABZR86_RS03655
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.1 mg/ml remove 793,444 + -0.7 793,481 + ABZR86_RS03645 0.17 +0.8 793,522 + ABZR86_RS03645 0.36 +0.3 793,565 - ABZR86_RS03645 0.55 -0.1 793,875 - +0.8 794,795 + ABZR86_RS03650 0.25 +0.8 794,838 + ABZR86_RS03650 0.26 +0.1 794,838 + ABZR86_RS03650 0.26 +0.6 794,839 - ABZR86_RS03650 0.26 +0.1 794,839 - ABZR86_RS03650 0.26 -0.1 794,924 + ABZR86_RS03650 0.29 +0.0 794,925 - ABZR86_RS03650 0.29 +0.1 794,965 - ABZR86_RS03650 0.31 +1.0 795,060 + ABZR86_RS03650 0.34 +0.4 795,096 + ABZR86_RS03650 0.35 +0.1 795,156 + ABZR86_RS03650 0.37 +0.2 795,156 + ABZR86_RS03650 0.37 -0.2 795,193 - ABZR86_RS03650 0.39 -0.1 795,223 - ABZR86_RS03650 0.40 +0.6 795,357 - ABZR86_RS03650 0.44 -0.1 795,408 + ABZR86_RS03650 0.46 +0.4 795,408 + ABZR86_RS03650 0.46 -0.1 795,409 - ABZR86_RS03650 0.46 -1.4 795,645 + ABZR86_RS03650 0.55 +0.1 795,747 + ABZR86_RS03650 0.58 +0.3 795,793 - ABZR86_RS03650 0.60 -0.5 795,880 - ABZR86_RS03650 0.63 -0.6 796,071 + ABZR86_RS03650 0.70 -0.1 796,107 + ABZR86_RS03650 0.71 +1.4 796,108 - ABZR86_RS03650 0.71 -0.5 796,230 + ABZR86_RS03650 0.75 +0.2 796,230 + ABZR86_RS03650 0.75 +1.0 796,287 + ABZR86_RS03650 0.77 -0.3 796,289 + ABZR86_RS03650 0.77 +0.3 796,290 - ABZR86_RS03650 0.77 +0.2 796,290 - ABZR86_RS03650 0.77 -0.3 796,290 - ABZR86_RS03650 0.77 -0.4 796,290 - ABZR86_RS03650 0.77 +0.7 796,290 - ABZR86_RS03650 0.77 +0.1 796,302 + ABZR86_RS03650 0.78 -0.5 796,302 + ABZR86_RS03650 0.78 -0.5 796,303 - ABZR86_RS03650 0.78 -0.2 796,303 - ABZR86_RS03650 0.78 -0.1 796,341 + ABZR86_RS03650 0.79 -0.4 796,492 - ABZR86_RS03650 0.85 +0.5 796,546 - ABZR86_RS03650 0.86 +0.1 796,647 + +1.0 796,648 - +0.1 796,648 - +0.7 796,650 + -0.6 796,651 - -0.1 796,684 - +0.1 796,752 + -0.1 796,848 + +0.9 796,849 - +0.1 796,849 - -0.9 796,857 + +0.5 796,857 + -0.4 796,859 + -0.3 796,969 - -0.7 797,028 + +0.5 797,029 - -0.9 797,029 - +0.3 797,029 - +0.6 797,037 + +0.7 797,057 + -0.8 797,089 + -0.5 797,356 + ABZR86_RS03655 0.28 -0.2 797,357 - ABZR86_RS03655 0.28 -0.0 797,357 - ABZR86_RS03655 0.28 -0.5 797,409 + ABZR86_RS03655 0.32 -1.0 797,503 + ABZR86_RS03655 0.40 +0.5 797,602 + ABZR86_RS03655 0.48 +0.4 797,602 + ABZR86_RS03655 0.48 +0.2 797,704 + ABZR86_RS03655 0.57 +0.4 797,704 + ABZR86_RS03655 0.57 -0.2 797,705 - ABZR86_RS03655 0.57 -0.1
Or see this region's nucleotide sequence