Experiment: Ceftazidime 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01905 and ABZR86_RS01910 are separated by 118 nucleotides ABZR86_RS01910 and ABZR86_RS01915 are separated by 28 nucleotides ABZR86_RS01915 and ABZR86_RS01920 are separated by 35 nucleotides
ABZR86_RS01905: ABZR86_RS01905 - exodeoxyribonuclease I, at 414,065 to 415,516
_RS01905
ABZR86_RS01910: ABZR86_RS01910 - oligoribonuclease, at 415,635 to 416,195
_RS01910
ABZR86_RS01915: ABZR86_RS01915 - dihydropteroate synthase, at 416,224 to 417,135
_RS01915
ABZR86_RS01920: ABZR86_RS01920 - phosphoglucosamine mutase, at 417,171 to 418,523
_RS01920
Position (kb) 416
417
418 Strain fitness (log2 ratio) -1
0
1 at 415.234 kb on - strand, within ABZR86_RS01905 at 415.234 kb on - strand, within ABZR86_RS01905 at 415.491 kb on + strand at 415.491 kb on + strand at 415.580 kb on + strand at 415.580 kb on + strand at 415.580 kb on + strand at 415.611 kb on + strand at 415.611 kb on + strand at 415.612 kb on - strand at 415.612 kb on - strand at 415.612 kb on - strand at 415.612 kb on - strand at 415.612 kb on - strand at 417.054 kb on - strand at 417.133 kb on + strand at 417.133 kb on + strand at 417.133 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.1 mg/ml remove 415,234 - ABZR86_RS01905 0.81 +0.3 415,234 - ABZR86_RS01905 0.81 -0.3 415,491 + +0.6 415,491 + -0.3 415,580 + +0.5 415,580 + +0.9 415,580 + -0.2 415,611 + +0.4 415,611 + -0.6 415,612 - +0.3 415,612 - +0.3 415,612 - +0.1 415,612 - -0.3 415,612 - +0.5 417,054 - +0.3 417,133 + -0.6 417,133 + +0.3 417,133 + +0.5
Or see this region's nucleotide sequence