Experiment: Ceftazidime 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01095 and ABZR86_RS01100 are separated by 486 nucleotides ABZR86_RS01100 and ABZR86_RS01105 overlap by 1 nucleotides ABZR86_RS01105 and ABZR86_RS01110 are separated by 201 nucleotides
ABZR86_RS01095: ABZR86_RS01095 - elongation factor G, at 217,162 to 219,327
_RS01095
ABZR86_RS01100: ABZR86_RS01100 - catalase family peroxidase, at 219,814 to 220,902
_RS01100
ABZR86_RS01105: ABZR86_RS01105 - cytochrome b/b6 domain-containing protein, at 220,902 to 221,447
_RS01105
ABZR86_RS01110: ABZR86_RS01110 - hypothetical protein, at 221,649 to 222,344
_RS01110
Position (kb) 219
220
221 Strain fitness (log2 ratio) -2
-1
0
1 at 218.855 kb on - strand, within ABZR86_RS01095 at 218.855 kb on - strand, within ABZR86_RS01095 at 218.914 kb on + strand, within ABZR86_RS01095 at 218.956 kb on + strand, within ABZR86_RS01095 at 218.956 kb on + strand, within ABZR86_RS01095 at 218.957 kb on - strand, within ABZR86_RS01095 at 218.957 kb on - strand, within ABZR86_RS01095 at 219.088 kb on + strand, within ABZR86_RS01095 at 219.088 kb on + strand, within ABZR86_RS01095 at 219.205 kb on + strand at 219.205 kb on + strand at 219.206 kb on - strand at 219.268 kb on + strand at 219.269 kb on - strand at 219.269 kb on - strand at 219.325 kb on + strand at 219.325 kb on + strand at 219.326 kb on - strand at 219.326 kb on - strand at 219.326 kb on - strand at 219.326 kb on - strand at 219.326 kb on - strand at 219.326 kb on - strand at 219.448 kb on + strand at 219.448 kb on + strand at 219.448 kb on + strand at 219.449 kb on - strand at 219.499 kb on + strand at 219.499 kb on + strand at 219.499 kb on + strand at 219.500 kb on - strand at 219.500 kb on - strand at 219.500 kb on - strand at 219.500 kb on - strand at 219.500 kb on - strand at 219.500 kb on - strand at 219.503 kb on + strand at 219.503 kb on + strand at 219.554 kb on - strand at 219.662 kb on + strand at 219.662 kb on + strand at 219.662 kb on + strand at 219.662 kb on + strand at 219.663 kb on - strand at 219.663 kb on - strand at 219.663 kb on - strand at 219.746 kb on - strand at 219.752 kb on + strand at 219.752 kb on + strand at 219.752 kb on + strand at 219.752 kb on + strand at 219.752 kb on + strand at 219.752 kb on + strand at 219.752 kb on + strand at 219.752 kb on + strand at 219.752 kb on + strand at 219.752 kb on + strand at 219.753 kb on - strand at 219.753 kb on - strand at 219.753 kb on - strand at 219.753 kb on - strand at 219.878 kb on - strand at 219.925 kb on + strand, within ABZR86_RS01100 at 219.925 kb on + strand, within ABZR86_RS01100 at 219.926 kb on - strand, within ABZR86_RS01100 at 219.926 kb on - strand, within ABZR86_RS01100 at 220.159 kb on + strand, within ABZR86_RS01100 at 220.160 kb on - strand, within ABZR86_RS01100 at 220.160 kb on - strand, within ABZR86_RS01100 at 220.160 kb on - strand, within ABZR86_RS01100 at 220.160 kb on - strand, within ABZR86_RS01100 at 220.206 kb on + strand, within ABZR86_RS01100 at 220.438 kb on + strand, within ABZR86_RS01100 at 220.438 kb on + strand, within ABZR86_RS01100 at 220.438 kb on + strand, within ABZR86_RS01100 at 220.438 kb on + strand, within ABZR86_RS01100 at 220.438 kb on + strand, within ABZR86_RS01100 at 220.438 kb on + strand, within ABZR86_RS01100 at 220.438 kb on + strand, within ABZR86_RS01100 at 220.438 kb on + strand, within ABZR86_RS01100 at 220.439 kb on - strand, within ABZR86_RS01100 at 220.439 kb on - strand, within ABZR86_RS01100 at 220.439 kb on - strand, within ABZR86_RS01100 at 220.439 kb on - strand, within ABZR86_RS01100 at 220.439 kb on - strand, within ABZR86_RS01100 at 220.439 kb on - strand, within ABZR86_RS01100 at 220.439 kb on - strand, within ABZR86_RS01100 at 220.439 kb on - strand, within ABZR86_RS01100 at 220.439 kb on - strand, within ABZR86_RS01100 at 220.439 kb on - strand, within ABZR86_RS01100 at 220.439 kb on - strand, within ABZR86_RS01100 at 220.548 kb on + strand, within ABZR86_RS01100 at 220.548 kb on + strand, within ABZR86_RS01100 at 220.548 kb on + strand, within ABZR86_RS01100 at 220.549 kb on - strand, within ABZR86_RS01100 at 220.549 kb on - strand, within ABZR86_RS01100 at 220.549 kb on - strand, within ABZR86_RS01100 at 220.552 kb on + strand, within ABZR86_RS01100 at 220.552 kb on + strand, within ABZR86_RS01100 at 220.552 kb on + strand, within ABZR86_RS01100 at 220.552 kb on + strand, within ABZR86_RS01100 at 220.552 kb on + strand, within ABZR86_RS01100 at 220.553 kb on - strand, within ABZR86_RS01100 at 220.553 kb on - strand, within ABZR86_RS01100 at 220.553 kb on - strand, within ABZR86_RS01100 at 220.553 kb on - strand, within ABZR86_RS01100 at 220.553 kb on - strand, within ABZR86_RS01100 at 220.553 kb on - strand, within ABZR86_RS01100 at 220.553 kb on - strand, within ABZR86_RS01100 at 220.553 kb on - strand, within ABZR86_RS01100 at 220.553 kb on - strand, within ABZR86_RS01100 at 220.750 kb on + strand, within ABZR86_RS01100 at 220.751 kb on - strand, within ABZR86_RS01100 at 220.751 kb on - strand, within ABZR86_RS01100 at 220.751 kb on - strand, within ABZR86_RS01100 at 220.763 kb on + strand, within ABZR86_RS01100 at 220.764 kb on - strand, within ABZR86_RS01100 at 220.822 kb on + strand at 220.822 kb on + strand at 220.834 kb on + strand at 220.834 kb on + strand at 220.835 kb on - strand at 220.919 kb on + strand at 220.919 kb on + strand at 220.919 kb on + strand at 220.919 kb on + strand at 220.919 kb on + strand at 220.920 kb on - strand at 220.920 kb on - strand at 220.927 kb on + strand at 220.927 kb on + strand at 220.928 kb on - strand at 221.181 kb on + strand, within ABZR86_RS01105 at 221.181 kb on + strand, within ABZR86_RS01105 at 221.181 kb on + strand, within ABZR86_RS01105 at 221.181 kb on + strand, within ABZR86_RS01105 at 221.181 kb on + strand, within ABZR86_RS01105 at 221.181 kb on + strand, within ABZR86_RS01105 at 221.182 kb on - strand, within ABZR86_RS01105 at 221.182 kb on - strand, within ABZR86_RS01105 at 221.182 kb on - strand, within ABZR86_RS01105 at 221.492 kb on - strand at 221.492 kb on - strand at 221.620 kb on - strand at 221.799 kb on + strand, within ABZR86_RS01110 at 221.799 kb on + strand, within ABZR86_RS01110 at 221.800 kb on - strand, within ABZR86_RS01110 at 221.800 kb on - strand, within ABZR86_RS01110
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.1 mg/ml remove 218,855 - ABZR86_RS01095 0.78 -0.2 218,855 - ABZR86_RS01095 0.78 -0.3 218,914 + ABZR86_RS01095 0.81 +0.9 218,956 + ABZR86_RS01095 0.83 -0.7 218,956 + ABZR86_RS01095 0.83 +0.4 218,957 - ABZR86_RS01095 0.83 +0.6 218,957 - ABZR86_RS01095 0.83 +0.5 219,088 + ABZR86_RS01095 0.89 +0.1 219,088 + ABZR86_RS01095 0.89 +0.1 219,205 + +0.7 219,205 + +0.2 219,206 - -0.3 219,268 + +0.1 219,269 - +0.5 219,269 - -0.0 219,325 + -0.4 219,325 + +0.0 219,326 - +0.6 219,326 - -0.3 219,326 - +0.6 219,326 - -0.2 219,326 - -0.2 219,326 - +0.3 219,448 + +0.4 219,448 + -0.1 219,448 + +0.0 219,449 - +0.5 219,499 + -0.3 219,499 + +0.1 219,499 + -0.7 219,500 - -0.4 219,500 - -0.3 219,500 - +0.3 219,500 - -0.2 219,500 - -0.4 219,500 - -0.1 219,503 + +0.1 219,503 + -0.1 219,554 - -0.6 219,662 + -0.0 219,662 + +0.4 219,662 + -0.8 219,662 + -1.2 219,663 - +0.1 219,663 - -0.8 219,663 - -0.2 219,746 - +1.4 219,752 + -0.1 219,752 + +0.3 219,752 + -0.1 219,752 + -0.3 219,752 + -1.3 219,752 + +0.5 219,752 + +0.5 219,752 + +0.0 219,752 + +0.0 219,752 + +0.1 219,753 - -0.9 219,753 - -0.1 219,753 - +0.6 219,753 - -0.5 219,878 - -0.1 219,925 + ABZR86_RS01100 0.10 -0.7 219,925 + ABZR86_RS01100 0.10 +0.2 219,926 - ABZR86_RS01100 0.10 -0.2 219,926 - ABZR86_RS01100 0.10 -0.3 220,159 + ABZR86_RS01100 0.32 -0.1 220,160 - ABZR86_RS01100 0.32 -2.0 220,160 - ABZR86_RS01100 0.32 -1.0 220,160 - ABZR86_RS01100 0.32 +0.0 220,160 - ABZR86_RS01100 0.32 +1.3 220,206 + ABZR86_RS01100 0.36 -0.5 220,438 + ABZR86_RS01100 0.57 +0.4 220,438 + ABZR86_RS01100 0.57 -0.1 220,438 + ABZR86_RS01100 0.57 -0.4 220,438 + ABZR86_RS01100 0.57 +0.5 220,438 + ABZR86_RS01100 0.57 +0.2 220,438 + ABZR86_RS01100 0.57 +0.4 220,438 + ABZR86_RS01100 0.57 -0.2 220,438 + ABZR86_RS01100 0.57 +0.1 220,439 - ABZR86_RS01100 0.57 -0.5 220,439 - ABZR86_RS01100 0.57 -1.1 220,439 - ABZR86_RS01100 0.57 -0.3 220,439 - ABZR86_RS01100 0.57 +0.2 220,439 - ABZR86_RS01100 0.57 -0.6 220,439 - ABZR86_RS01100 0.57 +0.1 220,439 - ABZR86_RS01100 0.57 -0.5 220,439 - ABZR86_RS01100 0.57 +0.0 220,439 - ABZR86_RS01100 0.57 -0.2 220,439 - ABZR86_RS01100 0.57 +0.2 220,439 - ABZR86_RS01100 0.57 -0.4 220,548 + ABZR86_RS01100 0.67 +0.0 220,548 + ABZR86_RS01100 0.67 +0.2 220,548 + ABZR86_RS01100 0.67 +0.2 220,549 - ABZR86_RS01100 0.67 -0.1 220,549 - ABZR86_RS01100 0.67 +0.0 220,549 - ABZR86_RS01100 0.67 -0.2 220,552 + ABZR86_RS01100 0.68 +0.0 220,552 + ABZR86_RS01100 0.68 -0.3 220,552 + ABZR86_RS01100 0.68 +0.5 220,552 + ABZR86_RS01100 0.68 +0.1 220,552 + ABZR86_RS01100 0.68 -0.0 220,553 - ABZR86_RS01100 0.68 -1.1 220,553 - ABZR86_RS01100 0.68 +0.4 220,553 - ABZR86_RS01100 0.68 +0.4 220,553 - ABZR86_RS01100 0.68 -0.3 220,553 - ABZR86_RS01100 0.68 -0.5 220,553 - ABZR86_RS01100 0.68 +0.1 220,553 - ABZR86_RS01100 0.68 -0.0 220,553 - ABZR86_RS01100 0.68 -0.2 220,553 - ABZR86_RS01100 0.68 -0.3 220,750 + ABZR86_RS01100 0.86 -0.7 220,751 - ABZR86_RS01100 0.86 -0.3 220,751 - ABZR86_RS01100 0.86 -0.3 220,751 - ABZR86_RS01100 0.86 -0.4 220,763 + ABZR86_RS01100 0.87 +0.9 220,764 - ABZR86_RS01100 0.87 +0.1 220,822 + -0.1 220,822 + -0.3 220,834 + +1.2 220,834 + +0.7 220,835 - +0.6 220,919 + +0.2 220,919 + +0.4 220,919 + -0.0 220,919 + +0.9 220,919 + +0.3 220,920 - +0.6 220,920 - +0.5 220,927 + -0.3 220,927 + -0.4 220,928 - -0.5 221,181 + ABZR86_RS01105 0.51 -1.4 221,181 + ABZR86_RS01105 0.51 +0.3 221,181 + ABZR86_RS01105 0.51 -0.1 221,181 + ABZR86_RS01105 0.51 +0.2 221,181 + ABZR86_RS01105 0.51 -0.3 221,181 + ABZR86_RS01105 0.51 +0.3 221,182 - ABZR86_RS01105 0.51 -1.3 221,182 - ABZR86_RS01105 0.51 +1.3 221,182 - ABZR86_RS01105 0.51 -0.3 221,492 - +1.2 221,492 - +0.2 221,620 - -0.5 221,799 + ABZR86_RS01110 0.22 +0.6 221,799 + ABZR86_RS01110 0.22 +0.2 221,800 - ABZR86_RS01110 0.22 +0.4 221,800 - ABZR86_RS01110 0.22 +0.1
Or see this region's nucleotide sequence