Experiment: Ceftazidime 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01060 and ABZR86_RS01065 are separated by 131 nucleotides ABZR86_RS01065 and ABZR86_RS01070 are separated by 225 nucleotides
ABZR86_RS01060: ABZR86_RS01060 - FecR domain-containing protein, at 208,943 to 210,640
_RS01060
ABZR86_RS01065: ABZR86_RS01065 - ATP-binding protein, at 210,772 to 213,354
_RS01065
ABZR86_RS01070: ABZR86_RS01070 - response regulator transcription factor, at 213,580 to 214,200
_RS01070
Position (kb) 210
211
212
213
214 Strain fitness (log2 ratio) -2
-1
0
1 at 210.031 kb on + strand, within ABZR86_RS01060 at 210.170 kb on + strand, within ABZR86_RS01060 at 210.171 kb on - strand, within ABZR86_RS01060 at 210.171 kb on - strand, within ABZR86_RS01060 at 210.420 kb on + strand, within ABZR86_RS01060 at 210.420 kb on + strand, within ABZR86_RS01060 at 210.420 kb on + strand, within ABZR86_RS01060 at 210.420 kb on + strand, within ABZR86_RS01060 at 210.421 kb on - strand, within ABZR86_RS01060 at 210.421 kb on - strand, within ABZR86_RS01060 at 210.421 kb on - strand, within ABZR86_RS01060 at 210.460 kb on - strand, within ABZR86_RS01060 at 210.505 kb on - strand at 210.594 kb on + strand at 210.594 kb on + strand at 210.633 kb on + strand at 210.633 kb on + strand at 210.633 kb on + strand at 210.633 kb on + strand at 210.633 kb on + strand at 210.633 kb on + strand at 210.633 kb on + strand at 210.633 kb on + strand at 210.633 kb on + strand at 210.633 kb on + strand at 210.633 kb on + strand at 210.634 kb on - strand at 210.634 kb on - strand at 210.634 kb on - strand at 210.634 kb on - strand at 210.634 kb on - strand at 210.634 kb on - strand at 210.634 kb on - strand at 210.769 kb on + strand at 210.769 kb on + strand at 210.770 kb on - strand at 210.770 kb on - strand at 210.770 kb on - strand at 210.770 kb on - strand at 210.773 kb on + strand at 210.773 kb on + strand at 210.773 kb on + strand at 210.773 kb on + strand at 210.773 kb on + strand at 210.773 kb on + strand at 210.774 kb on - strand at 210.774 kb on - strand at 210.774 kb on - strand at 210.774 kb on - strand at 211.096 kb on - strand, within ABZR86_RS01065 at 211.403 kb on + strand, within ABZR86_RS01065 at 211.404 kb on - strand, within ABZR86_RS01065 at 211.404 kb on - strand, within ABZR86_RS01065 at 212.102 kb on + strand, within ABZR86_RS01065 at 212.191 kb on + strand, within ABZR86_RS01065 at 212.192 kb on - strand, within ABZR86_RS01065 at 212.192 kb on - strand, within ABZR86_RS01065 at 212.317 kb on + strand, within ABZR86_RS01065 at 212.941 kb on + strand, within ABZR86_RS01065 at 212.941 kb on + strand, within ABZR86_RS01065 at 212.941 kb on + strand, within ABZR86_RS01065 at 212.942 kb on - strand, within ABZR86_RS01065 at 212.942 kb on - strand, within ABZR86_RS01065 at 212.942 kb on - strand, within ABZR86_RS01065 at 213.053 kb on - strand, within ABZR86_RS01065 at 213.053 kb on - strand, within ABZR86_RS01065 at 213.053 kb on - strand, within ABZR86_RS01065 at 213.139 kb on - strand at 213.483 kb on + strand at 213.483 kb on + strand at 213.483 kb on + strand at 213.483 kb on + strand at 213.483 kb on + strand at 213.483 kb on + strand at 213.484 kb on - strand at 213.484 kb on - strand at 213.484 kb on - strand at 213.484 kb on - strand at 213.484 kb on - strand at 213.484 kb on - strand at 213.647 kb on - strand, within ABZR86_RS01070 at 213.830 kb on + strand, within ABZR86_RS01070 at 213.830 kb on + strand, within ABZR86_RS01070 at 213.830 kb on + strand, within ABZR86_RS01070 at 213.830 kb on + strand, within ABZR86_RS01070 at 213.830 kb on + strand, within ABZR86_RS01070 at 213.830 kb on + strand, within ABZR86_RS01070 at 213.830 kb on + strand, within ABZR86_RS01070 at 213.961 kb on + strand, within ABZR86_RS01070 at 213.962 kb on - strand, within ABZR86_RS01070 at 214.131 kb on + strand, within ABZR86_RS01070 at 214.132 kb on - strand, within ABZR86_RS01070 at 214.174 kb on + strand at 214.198 kb on + strand at 214.198 kb on + strand at 214.199 kb on - strand at 214.199 kb on - strand at 214.268 kb on + strand at 214.289 kb on + strand at 214.290 kb on - strand at 214.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.1 mg/ml remove 210,031 + ABZR86_RS01060 0.64 -0.5 210,170 + ABZR86_RS01060 0.72 -0.4 210,171 - ABZR86_RS01060 0.72 +0.2 210,171 - ABZR86_RS01060 0.72 -0.7 210,420 + ABZR86_RS01060 0.87 -0.4 210,420 + ABZR86_RS01060 0.87 -0.4 210,420 + ABZR86_RS01060 0.87 -0.2 210,420 + ABZR86_RS01060 0.87 +0.7 210,421 - ABZR86_RS01060 0.87 +0.5 210,421 - ABZR86_RS01060 0.87 +0.2 210,421 - ABZR86_RS01060 0.87 +0.6 210,460 - ABZR86_RS01060 0.89 -1.1 210,505 - +0.0 210,594 + -0.4 210,594 + +0.1 210,633 + +1.6 210,633 + -0.6 210,633 + +1.2 210,633 + -0.4 210,633 + +0.1 210,633 + -0.1 210,633 + -0.3 210,633 + +0.8 210,633 + +0.5 210,633 + -0.3 210,633 + -0.1 210,634 - +0.2 210,634 - -0.8 210,634 - +0.0 210,634 - -0.1 210,634 - -0.6 210,634 - +0.7 210,634 - +0.3 210,769 + -0.4 210,769 + +0.0 210,770 - +0.1 210,770 - -0.2 210,770 - -0.6 210,770 - +0.9 210,773 + +0.5 210,773 + -0.1 210,773 + +0.1 210,773 + -0.2 210,773 + +0.1 210,773 + -0.0 210,774 - +0.2 210,774 - +0.4 210,774 - -0.2 210,774 - +0.0 211,096 - ABZR86_RS01065 0.13 +0.2 211,403 + ABZR86_RS01065 0.24 +0.6 211,404 - ABZR86_RS01065 0.24 +0.4 211,404 - ABZR86_RS01065 0.24 -0.4 212,102 + ABZR86_RS01065 0.51 +0.1 212,191 + ABZR86_RS01065 0.55 +0.2 212,192 - ABZR86_RS01065 0.55 -0.4 212,192 - ABZR86_RS01065 0.55 -2.3 212,317 + ABZR86_RS01065 0.60 -0.0 212,941 + ABZR86_RS01065 0.84 +0.6 212,941 + ABZR86_RS01065 0.84 +0.1 212,941 + ABZR86_RS01065 0.84 -0.4 212,942 - ABZR86_RS01065 0.84 -0.3 212,942 - ABZR86_RS01065 0.84 -0.2 212,942 - ABZR86_RS01065 0.84 +0.1 213,053 - ABZR86_RS01065 0.88 +0.1 213,053 - ABZR86_RS01065 0.88 -0.6 213,053 - ABZR86_RS01065 0.88 +0.2 213,139 - -0.3 213,483 + +0.1 213,483 + +1.1 213,483 + +0.4 213,483 + -0.9 213,483 + -1.0 213,483 + -0.1 213,484 - -0.7 213,484 - -1.4 213,484 - -1.0 213,484 - +0.1 213,484 - -0.6 213,484 - -1.4 213,647 - ABZR86_RS01070 0.11 -0.0 213,830 + ABZR86_RS01070 0.40 -0.4 213,830 + ABZR86_RS01070 0.40 +0.8 213,830 + ABZR86_RS01070 0.40 +0.4 213,830 + ABZR86_RS01070 0.40 -0.3 213,830 + ABZR86_RS01070 0.40 +0.2 213,830 + ABZR86_RS01070 0.40 +0.3 213,830 + ABZR86_RS01070 0.40 +0.2 213,961 + ABZR86_RS01070 0.61 -0.5 213,962 - ABZR86_RS01070 0.62 -0.7 214,131 + ABZR86_RS01070 0.89 +0.2 214,132 - ABZR86_RS01070 0.89 +0.6 214,174 + -0.1 214,198 + -1.4 214,198 + -1.0 214,199 - -0.4 214,199 - +0.0 214,268 + +0.2 214,289 + -0.5 214,290 - -0.5 214,290 - +0.1
Or see this region's nucleotide sequence