Experiment: Ceftazidime 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00255 and ABZR86_RS00260 are separated by 135 nucleotides ABZR86_RS00260 and ABZR86_RS00265 are separated by 142 nucleotides
ABZR86_RS00255: ABZR86_RS00255 - LLM class flavin-dependent oxidoreductase, at 45,124 to 46,122
_RS00255
ABZR86_RS00260: ABZR86_RS00260 - DUF72 domain-containing protein, at 46,258 to 47,088
_RS00260
ABZR86_RS00265: ABZR86_RS00265 - PD40 domain-containing protein, at 47,231 to 48,214
_RS00265
Position (kb) 46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 45.309 kb on + strand, within ABZR86_RS00255 at 45.493 kb on + strand, within ABZR86_RS00255 at 45.494 kb on - strand, within ABZR86_RS00255 at 45.541 kb on + strand, within ABZR86_RS00255 at 45.541 kb on + strand, within ABZR86_RS00255 at 45.668 kb on - strand, within ABZR86_RS00255 at 45.722 kb on - strand, within ABZR86_RS00255 at 45.908 kb on - strand, within ABZR86_RS00255 at 46.075 kb on + strand at 46.075 kb on + strand at 46.076 kb on - strand at 46.219 kb on + strand at 46.220 kb on - strand at 46.220 kb on - strand at 46.220 kb on - strand at 46.220 kb on - strand at 46.332 kb on - strand at 46.499 kb on + strand, within ABZR86_RS00260 at 46.500 kb on - strand, within ABZR86_RS00260 at 46.552 kb on - strand, within ABZR86_RS00260 at 46.553 kb on + strand, within ABZR86_RS00260 at 46.554 kb on - strand, within ABZR86_RS00260 at 46.592 kb on + strand, within ABZR86_RS00260 at 46.592 kb on + strand, within ABZR86_RS00260 at 46.592 kb on + strand, within ABZR86_RS00260 at 46.592 kb on + strand, within ABZR86_RS00260 at 46.592 kb on + strand, within ABZR86_RS00260 at 46.593 kb on - strand, within ABZR86_RS00260 at 46.593 kb on - strand, within ABZR86_RS00260 at 46.593 kb on - strand, within ABZR86_RS00260 at 46.593 kb on - strand, within ABZR86_RS00260 at 46.593 kb on - strand, within ABZR86_RS00260 at 46.830 kb on - strand, within ABZR86_RS00260 at 46.889 kb on + strand, within ABZR86_RS00260 at 46.916 kb on + strand, within ABZR86_RS00260 at 46.916 kb on + strand, within ABZR86_RS00260 at 46.916 kb on + strand, within ABZR86_RS00260 at 46.917 kb on - strand, within ABZR86_RS00260 at 46.917 kb on - strand, within ABZR86_RS00260 at 46.917 kb on - strand, within ABZR86_RS00260 at 46.958 kb on + strand, within ABZR86_RS00260 at 46.959 kb on - strand, within ABZR86_RS00260 at 47.018 kb on + strand at 47.019 kb on - strand at 47.712 kb on - strand, within ABZR86_RS00265 at 47.712 kb on - strand, within ABZR86_RS00265 at 47.810 kb on + strand, within ABZR86_RS00265 at 47.810 kb on + strand, within ABZR86_RS00265 at 47.939 kb on + strand, within ABZR86_RS00265 at 47.939 kb on + strand, within ABZR86_RS00265 at 47.940 kb on - strand, within ABZR86_RS00265 at 47.940 kb on - strand, within ABZR86_RS00265 at 48.051 kb on - strand, within ABZR86_RS00265 at 48.051 kb on - strand, within ABZR86_RS00265 at 48.051 kb on - strand, within ABZR86_RS00265 at 48.051 kb on - strand, within ABZR86_RS00265 at 48.084 kb on - strand, within ABZR86_RS00265
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.1 mg/ml remove 45,309 + ABZR86_RS00255 0.19 +0.2 45,493 + ABZR86_RS00255 0.37 -0.5 45,494 - ABZR86_RS00255 0.37 +0.2 45,541 + ABZR86_RS00255 0.42 -0.0 45,541 + ABZR86_RS00255 0.42 -0.8 45,668 - ABZR86_RS00255 0.54 -0.8 45,722 - ABZR86_RS00255 0.60 -0.7 45,908 - ABZR86_RS00255 0.78 -0.7 46,075 + -0.9 46,075 + +0.3 46,076 - +0.9 46,219 + -0.0 46,220 - -2.0 46,220 - +0.8 46,220 - -0.9 46,220 - -0.6 46,332 - +1.3 46,499 + ABZR86_RS00260 0.29 +0.2 46,500 - ABZR86_RS00260 0.29 -0.2 46,552 - ABZR86_RS00260 0.35 -0.9 46,553 + ABZR86_RS00260 0.35 +0.6 46,554 - ABZR86_RS00260 0.36 +0.4 46,592 + ABZR86_RS00260 0.40 +1.2 46,592 + ABZR86_RS00260 0.40 +0.3 46,592 + ABZR86_RS00260 0.40 -0.9 46,592 + ABZR86_RS00260 0.40 -0.1 46,592 + ABZR86_RS00260 0.40 -0.5 46,593 - ABZR86_RS00260 0.40 -0.9 46,593 - ABZR86_RS00260 0.40 -0.9 46,593 - ABZR86_RS00260 0.40 -0.0 46,593 - ABZR86_RS00260 0.40 -0.1 46,593 - ABZR86_RS00260 0.40 +0.3 46,830 - ABZR86_RS00260 0.69 -0.4 46,889 + ABZR86_RS00260 0.76 +0.2 46,916 + ABZR86_RS00260 0.79 +0.3 46,916 + ABZR86_RS00260 0.79 -0.4 46,916 + ABZR86_RS00260 0.79 -0.1 46,917 - ABZR86_RS00260 0.79 -0.1 46,917 - ABZR86_RS00260 0.79 -0.1 46,917 - ABZR86_RS00260 0.79 -1.6 46,958 + ABZR86_RS00260 0.84 +0.2 46,959 - ABZR86_RS00260 0.84 -0.5 47,018 + +0.3 47,019 - +0.3 47,712 - ABZR86_RS00265 0.49 +1.2 47,712 - ABZR86_RS00265 0.49 +0.0 47,810 + ABZR86_RS00265 0.59 -0.5 47,810 + ABZR86_RS00265 0.59 +0.2 47,939 + ABZR86_RS00265 0.72 -0.9 47,939 + ABZR86_RS00265 0.72 +0.3 47,940 - ABZR86_RS00265 0.72 -0.2 47,940 - ABZR86_RS00265 0.72 +1.0 48,051 - ABZR86_RS00265 0.83 -0.3 48,051 - ABZR86_RS00265 0.83 -1.1 48,051 - ABZR86_RS00265 0.83 -0.1 48,051 - ABZR86_RS00265 0.83 -3.1 48,084 - ABZR86_RS00265 0.87 +0.2
Or see this region's nucleotide sequence