Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3049

Experiment: MoYLS4 with A22 0.0875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3048 and DvMF_3049 are separated by 382 nucleotidesDvMF_3049 and DvMF_3050 are separated by 624 nucleotides DvMF_3048: DvMF_3048 - hypothetical protein (RefSeq), at 3,845,869 to 3,846,501 _3048 DvMF_3049: DvMF_3049 - protein of unknown function DUF554 (RefSeq), at 3,846,884 to 3,847,570 _3049 DvMF_3050: DvMF_3050 - excinuclease ABC, A subunit (RefSeq), at 3,848,195 to 3,851,590 _3050 Position (kb) 3846 3847 3848Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3845.950 kb on - strand, within DvMF_3048at 3845.969 kb on + strand, within DvMF_3048at 3846.043 kb on - strand, within DvMF_3048at 3846.559 kb on - strandat 3846.574 kb on - strandat 3847.218 kb on - strand, within DvMF_3049at 3847.300 kb on - strand, within DvMF_3049at 3847.383 kb on + strand, within DvMF_3049at 3847.466 kb on - strand, within DvMF_3049at 3847.591 kb on + strandat 3847.682 kb on - strandat 3847.948 kb on - strandat 3847.948 kb on - strandat 3848.006 kb on + strandat 3848.082 kb on + strandat 3848.183 kb on - strandat 3848.261 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml
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3,845,950 - DvMF_3048 0.13 -0.7
3,845,969 + DvMF_3048 0.16 -4.4
3,846,043 - DvMF_3048 0.27 -1.2
3,846,559 - -0.6
3,846,574 - -0.7
3,847,218 - DvMF_3049 0.49 -3.8
3,847,300 - DvMF_3049 0.61 -0.8
3,847,383 + DvMF_3049 0.73 -3.2
3,847,466 - DvMF_3049 0.85 -0.1
3,847,591 + -1.0
3,847,682 - -1.5
3,847,948 - -1.2
3,847,948 - -0.4
3,848,006 + -0.9
3,848,082 + -0.4
3,848,183 - -3.0
3,848,261 - -0.7

Or see this region's nucleotide sequence