Experiment: MoYLS4 with A22 0.0875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2972 and DvMF_2973 are separated by 336 nucleotides DvMF_2973 and DvMF_2974 are separated by 87 nucleotides DvMF_2974 and DvMF_2975 are separated by 288 nucleotides
DvMF_2972: DvMF_2972 - Glycerophosphodiester phosphodiesterase (RefSeq), at 3,747,860 to 3,748,771
_2972
DvMF_2973: DvMF_2973 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,749,108 to 3,750,070
_2973
DvMF_2974: DvMF_2974 - transcriptional regulator, HxlR family (RefSeq), at 3,750,158 to 3,750,640
_2974
DvMF_2975: DvMF_2975 - nitroreductase (RefSeq), at 3,750,929 to 3,751,438
_2975
Position (kb)
3749
3750
3751 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3748.166 kb on - strand, within DvMF_2972 at 3748.303 kb on - strand, within DvMF_2972 at 3748.400 kb on + strand, within DvMF_2972 at 3748.524 kb on - strand, within DvMF_2972 at 3748.536 kb on - strand, within DvMF_2972 at 3748.547 kb on + strand, within DvMF_2972 at 3748.747 kb on - strand at 3748.775 kb on - strand at 3748.788 kb on + strand at 3748.920 kb on - strand at 3749.146 kb on - strand at 3749.146 kb on - strand at 3749.208 kb on + strand, within DvMF_2973 at 3749.216 kb on - strand, within DvMF_2973 at 3749.221 kb on - strand, within DvMF_2973 at 3749.381 kb on + strand, within DvMF_2973 at 3749.692 kb on + strand, within DvMF_2973 at 3749.700 kb on - strand, within DvMF_2973 at 3749.817 kb on + strand, within DvMF_2973 at 3749.980 kb on - strand at 3749.989 kb on - strand at 3749.999 kb on - strand at 3750.179 kb on + strand at 3750.477 kb on - strand, within DvMF_2974 at 3750.521 kb on - strand, within DvMF_2974 at 3750.622 kb on - strand at 3750.993 kb on - strand, within DvMF_2975 at 3751.030 kb on + strand, within DvMF_2975 at 3751.058 kb on - strand, within DvMF_2975
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml remove 3,748,166 - DvMF_2972 0.34 -0.4 3,748,303 - DvMF_2972 0.49 -0.3 3,748,400 + DvMF_2972 0.59 -0.3 3,748,524 - DvMF_2972 0.73 -0.2 3,748,536 - DvMF_2972 0.74 -0.2 3,748,547 + DvMF_2972 0.75 -0.6 3,748,747 - -0.1 3,748,775 - -1.1 3,748,788 + -2.8 3,748,920 - -2.0 3,749,146 - -1.0 3,749,146 - -1.3 3,749,208 + DvMF_2973 0.10 -0.8 3,749,216 - DvMF_2973 0.11 -1.8 3,749,221 - DvMF_2973 0.12 -0.8 3,749,381 + DvMF_2973 0.28 -0.8 3,749,692 + DvMF_2973 0.61 +0.2 3,749,700 - DvMF_2973 0.61 -0.5 3,749,817 + DvMF_2973 0.74 -1.6 3,749,980 - -0.8 3,749,989 - -1.0 3,749,999 - +0.2 3,750,179 + -0.1 3,750,477 - DvMF_2974 0.66 -0.7 3,750,521 - DvMF_2974 0.75 -0.9 3,750,622 - -0.2 3,750,993 - DvMF_2975 0.13 +0.2 3,751,030 + DvMF_2975 0.20 -0.5 3,751,058 - DvMF_2975 0.25 -0.6
Or see this region's nucleotide sequence