Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2705

Experiment: MoYLS4 with A22 0.0875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2703 and DvMF_2704 are separated by 5 nucleotidesDvMF_2704 and DvMF_2705 are separated by 13 nucleotidesDvMF_2705 and DvMF_2706 are separated by 123 nucleotides DvMF_2703: DvMF_2703 - hypothetical protein (RefSeq), at 3,419,978 to 3,422,101 _2703 DvMF_2704: DvMF_2704 - glycosyl transferase family 2 (RefSeq), at 3,422,107 to 3,422,943 _2704 DvMF_2705: DvMF_2705 - glycosyl transferase family 2 (RefSeq), at 3,422,957 to 3,423,961 _2705 DvMF_2706: DvMF_2706 - glycosyl transferase group 1 (RefSeq), at 3,424,085 to 3,425,206 _2706 Position (kb) 3422 3423 3424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3422.372 kb on - strand, within DvMF_2704at 3424.509 kb on - strand, within DvMF_2706at 3424.723 kb on + strand, within DvMF_2706at 3424.750 kb on - strand, within DvMF_2706at 3424.868 kb on + strand, within DvMF_2706

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml
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3,422,372 - DvMF_2704 0.32 -3.3
3,424,509 - DvMF_2706 0.38 -1.5
3,424,723 + DvMF_2706 0.57 -4.4
3,424,750 - DvMF_2706 0.59 -3.0
3,424,868 + DvMF_2706 0.70 -4.7

Or see this region's nucleotide sequence