Experiment: MoYLS4 with A22 0.0875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2627 and DvMF_2628 are separated by 239 nucleotides DvMF_2628 and DvMF_2629 are separated by 237 nucleotides DvMF_2629 and DvMF_2630 are separated by 196 nucleotides
DvMF_2627: DvMF_2627 - transcriptional regulator, TetR family (RefSeq), at 3,318,289 to 3,318,849
_2627
DvMF_2628: DvMF_2628 - hypothetical protein (RefSeq), at 3,319,089 to 3,320,864
_2628
DvMF_2629: DvMF_2629 - Cupin 2 conserved barrel domain protein (RefSeq), at 3,321,102 to 3,321,518
_2629
DvMF_2630: DvMF_2630 - penicillin-binding protein, 1A family (RefSeq), at 3,321,715 to 3,324,138
_2630
Position (kb)
3319
3320
3321 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3318.138 kb on + strand at 3318.150 kb on + strand at 3318.654 kb on + strand, within DvMF_2627 at 3318.662 kb on - strand, within DvMF_2627 at 3318.760 kb on + strand, within DvMF_2627 at 3318.821 kb on + strand at 3319.136 kb on - strand at 3319.390 kb on - strand, within DvMF_2628 at 3319.658 kb on + strand, within DvMF_2628 at 3319.991 kb on + strand, within DvMF_2628 at 3319.991 kb on + strand, within DvMF_2628 at 3319.991 kb on + strand, within DvMF_2628 at 3319.991 kb on + strand, within DvMF_2628 at 3319.999 kb on + strand, within DvMF_2628 at 3320.285 kb on - strand, within DvMF_2628 at 3320.412 kb on - strand, within DvMF_2628 at 3320.644 kb on + strand, within DvMF_2628 at 3320.729 kb on - strand at 3320.884 kb on + strand at 3321.008 kb on - strand at 3321.008 kb on - strand at 3321.018 kb on - strand at 3321.101 kb on - strand at 3321.147 kb on + strand, within DvMF_2629 at 3321.192 kb on - strand, within DvMF_2629 at 3321.256 kb on - strand, within DvMF_2629 at 3321.300 kb on + strand, within DvMF_2629 at 3321.343 kb on - strand, within DvMF_2629 at 3321.402 kb on + strand, within DvMF_2629 at 3321.548 kb on + strand at 3321.713 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml remove 3,318,138 + -0.4 3,318,150 + -0.5 3,318,654 + DvMF_2627 0.65 -2.0 3,318,662 - DvMF_2627 0.66 -2.4 3,318,760 + DvMF_2627 0.84 -1.7 3,318,821 + -1.5 3,319,136 - -0.6 3,319,390 - DvMF_2628 0.17 +0.6 3,319,658 + DvMF_2628 0.32 -0.5 3,319,991 + DvMF_2628 0.51 -0.5 3,319,991 + DvMF_2628 0.51 -1.3 3,319,991 + DvMF_2628 0.51 -0.3 3,319,991 + DvMF_2628 0.51 -0.8 3,319,999 + DvMF_2628 0.51 -0.7 3,320,285 - DvMF_2628 0.67 -1.2 3,320,412 - DvMF_2628 0.74 +0.2 3,320,644 + DvMF_2628 0.88 -1.2 3,320,729 - -0.1 3,320,884 + -1.2 3,321,008 - +0.3 3,321,008 - -1.7 3,321,018 - -0.4 3,321,101 - -2.9 3,321,147 + DvMF_2629 0.11 -0.1 3,321,192 - DvMF_2629 0.22 -1.3 3,321,256 - DvMF_2629 0.37 -0.1 3,321,300 + DvMF_2629 0.47 -0.7 3,321,343 - DvMF_2629 0.58 +0.3 3,321,402 + DvMF_2629 0.72 -1.0 3,321,548 + -0.3 3,321,713 + -1.4
Or see this region's nucleotide sequence