Experiment: MoYLS4 with A22 0.0875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2603 and DvMF_2604 are separated by 24 nucleotides DvMF_2604 and DvMF_2605 are separated by 156 nucleotides DvMF_2605 and DvMF_2606 are separated by 513 nucleotides
DvMF_2603: DvMF_2603 - hypothetical protein (RefSeq), at 3,290,980 to 3,292,089
_2603
DvMF_2604: DvMF_2604 - hypothetical protein (RefSeq), at 3,292,114 to 3,292,509
_2604
DvMF_2605: DvMF_2605 - UspA domain protein (RefSeq), at 3,292,666 to 3,293,109
_2605
DvMF_2606: DvMF_2606 - large conductance mechanosensitive channel protein (RefSeq), at 3,293,623 to 3,294,069
_2606
Position (kb)
3292
3293
3294 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3292.185 kb on - strand, within DvMF_2604 at 3292.280 kb on - strand, within DvMF_2604 at 3292.456 kb on - strand, within DvMF_2604 at 3292.460 kb on - strand, within DvMF_2604 at 3292.494 kb on + strand at 3292.580 kb on - strand at 3292.761 kb on - strand, within DvMF_2605 at 3292.866 kb on + strand, within DvMF_2605 at 3293.024 kb on + strand, within DvMF_2605 at 3293.071 kb on - strand at 3293.427 kb on + strand at 3293.427 kb on + strand at 3293.435 kb on - strand at 3293.484 kb on + strand at 3293.489 kb on + strand at 3293.784 kb on - strand, within DvMF_2606 at 3293.931 kb on + strand, within DvMF_2606 at 3294.017 kb on + strand, within DvMF_2606
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml remove 3,292,185 - DvMF_2604 0.18 -0.9 3,292,280 - DvMF_2604 0.42 -1.5 3,292,456 - DvMF_2604 0.86 -0.7 3,292,460 - DvMF_2604 0.87 -2.2 3,292,494 + -0.9 3,292,580 - -0.4 3,292,761 - DvMF_2605 0.21 -0.6 3,292,866 + DvMF_2605 0.45 -3.5 3,293,024 + DvMF_2605 0.81 +0.4 3,293,071 - -0.6 3,293,427 + -1.2 3,293,427 + -0.2 3,293,435 - -1.3 3,293,484 + -2.2 3,293,489 + -0.8 3,293,784 - DvMF_2606 0.36 -0.7 3,293,931 + DvMF_2606 0.69 -0.1 3,294,017 + DvMF_2606 0.88 -1.6
Or see this region's nucleotide sequence