Experiment: MoYLS4 with A22 0.0875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2547 and DvMF_2548 are separated by 52 nucleotides DvMF_2548 and DvMF_2549 overlap by 4 nucleotides
DvMF_2547: DvMF_2547 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,218,793 to 3,219,587
_2547
DvMF_2548: DvMF_2548 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,219,640 to 3,222,225
_2548
DvMF_2549: DvMF_2549 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 3,222,222 to 3,223,562
_2549
Position (kb)
3219
3220
3221
3222
3223 Strain fitness (log2 ratio)
-2
-1
0
1 at 3218.893 kb on + strand, within DvMF_2547 at 3218.969 kb on - strand, within DvMF_2547 at 3218.988 kb on + strand, within DvMF_2547 at 3219.011 kb on - strand, within DvMF_2547 at 3219.486 kb on - strand, within DvMF_2547 at 3219.567 kb on + strand at 3219.699 kb on + strand at 3219.749 kb on + strand at 3219.814 kb on - strand at 3220.204 kb on - strand, within DvMF_2548 at 3220.249 kb on - strand, within DvMF_2548 at 3220.259 kb on + strand, within DvMF_2548 at 3220.259 kb on + strand, within DvMF_2548 at 3220.259 kb on + strand, within DvMF_2548 at 3220.267 kb on - strand, within DvMF_2548 at 3220.267 kb on - strand, within DvMF_2548 at 3220.267 kb on - strand, within DvMF_2548 at 3220.537 kb on - strand, within DvMF_2548 at 3220.759 kb on - strand, within DvMF_2548 at 3220.782 kb on + strand, within DvMF_2548 at 3220.843 kb on - strand, within DvMF_2548 at 3221.146 kb on + strand, within DvMF_2548 at 3221.334 kb on + strand, within DvMF_2548 at 3221.433 kb on + strand, within DvMF_2548 at 3221.582 kb on + strand, within DvMF_2548 at 3221.689 kb on - strand, within DvMF_2548 at 3221.742 kb on - strand, within DvMF_2548 at 3221.774 kb on + strand, within DvMF_2548 at 3221.774 kb on + strand, within DvMF_2548 at 3221.782 kb on - strand, within DvMF_2548 at 3221.953 kb on + strand, within DvMF_2548 at 3222.046 kb on - strand at 3222.098 kb on - strand at 3222.171 kb on + strand at 3222.437 kb on - strand, within DvMF_2549 at 3222.677 kb on + strand, within DvMF_2549 at 3222.772 kb on - strand, within DvMF_2549 at 3223.020 kb on - strand, within DvMF_2549 at 3223.020 kb on - strand, within DvMF_2549 at 3223.052 kb on - strand, within DvMF_2549
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml remove 3,218,893 + DvMF_2547 0.13 +1.1 3,218,969 - DvMF_2547 0.22 +0.0 3,218,988 + DvMF_2547 0.25 +0.2 3,219,011 - DvMF_2547 0.27 +0.2 3,219,486 - DvMF_2547 0.87 +0.4 3,219,567 + -0.1 3,219,699 + -0.8 3,219,749 + +1.4 3,219,814 - +0.1 3,220,204 - DvMF_2548 0.22 -0.8 3,220,249 - DvMF_2548 0.24 -0.4 3,220,259 + DvMF_2548 0.24 -0.4 3,220,259 + DvMF_2548 0.24 -0.3 3,220,259 + DvMF_2548 0.24 -0.6 3,220,267 - DvMF_2548 0.24 -0.8 3,220,267 - DvMF_2548 0.24 -1.7 3,220,267 - DvMF_2548 0.24 -1.7 3,220,537 - DvMF_2548 0.35 -0.4 3,220,759 - DvMF_2548 0.43 -0.1 3,220,782 + DvMF_2548 0.44 +1.2 3,220,843 - DvMF_2548 0.47 -0.4 3,221,146 + DvMF_2548 0.58 -1.1 3,221,334 + DvMF_2548 0.66 -0.3 3,221,433 + DvMF_2548 0.69 -0.4 3,221,582 + DvMF_2548 0.75 -1.0 3,221,689 - DvMF_2548 0.79 -2.5 3,221,742 - DvMF_2548 0.81 -0.2 3,221,774 + DvMF_2548 0.83 -1.3 3,221,774 + DvMF_2548 0.83 +0.1 3,221,782 - DvMF_2548 0.83 -1.3 3,221,953 + DvMF_2548 0.89 -0.6 3,222,046 - -0.5 3,222,098 - +0.4 3,222,171 + -0.5 3,222,437 - DvMF_2549 0.16 -2.0 3,222,677 + DvMF_2549 0.34 +0.0 3,222,772 - DvMF_2549 0.41 -0.8 3,223,020 - DvMF_2549 0.60 -0.6 3,223,020 - DvMF_2549 0.60 -0.6 3,223,052 - DvMF_2549 0.62 -0.1
Or see this region's nucleotide sequence