Experiment: MoYLS4 with A22 0.0875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2410 and DvMF_2411 are separated by 15 nucleotides DvMF_2411 and DvMF_2412 are separated by 60 nucleotides
DvMF_2410: DvMF_2410 - protein serine/threonine phosphatase (RefSeq), at 3,047,840 to 3,049,822
_2410
DvMF_2411: DvMF_2411 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,049,838 to 3,051,172
_2411
DvMF_2412: DvMF_2412 - type III secretion protein, YscU/HrpY family (RefSeq), at 3,051,233 to 3,052,273
_2412
Position (kb)
3049
3050
3051
3052 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3048.926 kb on + strand, within DvMF_2410 at 3049.566 kb on + strand, within DvMF_2410 at 3049.592 kb on + strand, within DvMF_2410 at 3049.729 kb on + strand at 3049.738 kb on + strand at 3049.810 kb on + strand at 3050.177 kb on - strand, within DvMF_2411 at 3050.227 kb on + strand, within DvMF_2411 at 3050.269 kb on - strand, within DvMF_2411 at 3050.295 kb on + strand, within DvMF_2411 at 3050.460 kb on + strand, within DvMF_2411 at 3050.542 kb on + strand, within DvMF_2411 at 3050.696 kb on + strand, within DvMF_2411 at 3050.910 kb on + strand, within DvMF_2411 at 3051.112 kb on - strand at 3051.260 kb on + strand at 3051.279 kb on + strand at 3051.287 kb on - strand at 3051.287 kb on - strand at 3051.300 kb on - strand at 3051.461 kb on + strand, within DvMF_2412 at 3051.510 kb on - strand, within DvMF_2412 at 3051.537 kb on - strand, within DvMF_2412 at 3051.578 kb on - strand, within DvMF_2412 at 3051.666 kb on + strand, within DvMF_2412 at 3051.736 kb on - strand, within DvMF_2412 at 3051.972 kb on - strand, within DvMF_2412 at 3051.990 kb on + strand, within DvMF_2412
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml remove 3,048,926 + DvMF_2410 0.55 -0.1 3,049,566 + DvMF_2410 0.87 -0.2 3,049,592 + DvMF_2410 0.88 +0.1 3,049,729 + -1.5 3,049,738 + -1.2 3,049,810 + -0.5 3,050,177 - DvMF_2411 0.25 -1.2 3,050,227 + DvMF_2411 0.29 -1.1 3,050,269 - DvMF_2411 0.32 -1.7 3,050,295 + DvMF_2411 0.34 +0.1 3,050,460 + DvMF_2411 0.47 -1.8 3,050,542 + DvMF_2411 0.53 -3.9 3,050,696 + DvMF_2411 0.64 -0.6 3,050,910 + DvMF_2411 0.80 -0.4 3,051,112 - -1.7 3,051,260 + -0.4 3,051,279 + -0.4 3,051,287 - -0.9 3,051,287 - +0.1 3,051,300 - -0.4 3,051,461 + DvMF_2412 0.22 -0.6 3,051,510 - DvMF_2412 0.27 -0.1 3,051,537 - DvMF_2412 0.29 -1.4 3,051,578 - DvMF_2412 0.33 -0.8 3,051,666 + DvMF_2412 0.42 -0.8 3,051,736 - DvMF_2412 0.48 -1.4 3,051,972 - DvMF_2412 0.71 -0.2 3,051,990 + DvMF_2412 0.73 -0.6
Or see this region's nucleotide sequence