Experiment: MoYLS4 with A22 0.0875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1989 and DvMF_1990 are separated by 400 nucleotides DvMF_1990 and DvMF_1991 are separated by 35 nucleotides DvMF_1991 and DvMF_1992 are separated by 332 nucleotides
DvMF_1989: DvMF_1989 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,462,844 to 2,464,544
_1989
DvMF_1990: DvMF_1990 - Pyruvate, water dikinase (RefSeq), at 2,464,945 to 2,467,740
_1990
DvMF_1991: DvMF_1991 - response regulator receiver protein (RefSeq), at 2,467,776 to 2,468,237
_1991
DvMF_1992: DvMF_1992 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,468,570 to 2,469,688
_1992
Position (kb)
2464
2465
2466
2467
2468 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2463.987 kb on + strand, within DvMF_1989 at 2464.033 kb on + strand, within DvMF_1989 at 2464.041 kb on - strand, within DvMF_1989 at 2464.203 kb on + strand, within DvMF_1989 at 2464.291 kb on + strand, within DvMF_1989 at 2464.313 kb on + strand, within DvMF_1989 at 2464.318 kb on + strand, within DvMF_1989 at 2464.370 kb on - strand, within DvMF_1989 at 2464.650 kb on + strand at 2465.038 kb on - strand at 2465.391 kb on + strand, within DvMF_1990 at 2465.662 kb on - strand, within DvMF_1990 at 2465.836 kb on - strand, within DvMF_1990 at 2465.915 kb on - strand, within DvMF_1990 at 2465.967 kb on - strand, within DvMF_1990 at 2465.996 kb on - strand, within DvMF_1990 at 2466.341 kb on + strand, within DvMF_1990 at 2466.522 kb on + strand, within DvMF_1990 at 2466.565 kb on - strand, within DvMF_1990 at 2466.602 kb on + strand, within DvMF_1990 at 2466.602 kb on + strand, within DvMF_1990 at 2466.610 kb on - strand, within DvMF_1990 at 2466.610 kb on - strand, within DvMF_1990 at 2466.752 kb on - strand, within DvMF_1990 at 2466.779 kb on + strand, within DvMF_1990 at 2466.889 kb on - strand, within DvMF_1990 at 2466.890 kb on + strand, within DvMF_1990 at 2467.388 kb on - strand, within DvMF_1990 at 2467.510 kb on - strand at 2467.512 kb on + strand at 2468.281 kb on + strand at 2468.388 kb on + strand at 2468.388 kb on + strand at 2468.404 kb on - strand at 2468.423 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml remove 2,463,987 + DvMF_1989 0.67 -1.0 2,464,033 + DvMF_1989 0.70 -1.1 2,464,041 - DvMF_1989 0.70 -0.7 2,464,203 + DvMF_1989 0.80 +0.1 2,464,291 + DvMF_1989 0.85 -3.4 2,464,313 + DvMF_1989 0.86 -1.0 2,464,318 + DvMF_1989 0.87 -0.4 2,464,370 - DvMF_1989 0.90 -0.5 2,464,650 + -1.2 2,465,038 - -0.6 2,465,391 + DvMF_1990 0.16 -0.6 2,465,662 - DvMF_1990 0.26 -2.0 2,465,836 - DvMF_1990 0.32 -1.4 2,465,915 - DvMF_1990 0.35 +0.1 2,465,967 - DvMF_1990 0.37 -2.1 2,465,996 - DvMF_1990 0.38 -0.6 2,466,341 + DvMF_1990 0.50 -2.1 2,466,522 + DvMF_1990 0.56 -0.5 2,466,565 - DvMF_1990 0.58 -0.6 2,466,602 + DvMF_1990 0.59 -0.0 2,466,602 + DvMF_1990 0.59 -3.0 2,466,610 - DvMF_1990 0.60 -0.4 2,466,610 - DvMF_1990 0.60 -0.9 2,466,752 - DvMF_1990 0.65 -0.4 2,466,779 + DvMF_1990 0.66 -0.4 2,466,889 - DvMF_1990 0.70 -0.2 2,466,890 + DvMF_1990 0.70 -1.1 2,467,388 - DvMF_1990 0.87 -0.9 2,467,510 - -0.8 2,467,512 + -0.2 2,468,281 + -0.1 2,468,388 + -0.7 2,468,388 + +0.2 2,468,404 - -0.5 2,468,423 + -0.7
Or see this region's nucleotide sequence