Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1915

Experiment: MoYLS4 with A22 0.0875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1914 and DvMF_1915 are separated by 43 nucleotidesDvMF_1915 and DvMF_1916 are separated by 341 nucleotides DvMF_1914: DvMF_1914 - protein of unknown function DUF939 (RefSeq), at 2,359,458 to 2,360,645 _1914 DvMF_1915: DvMF_1915 - hypothetical protein (RefSeq), at 2,360,689 to 2,360,985 _1915 DvMF_1916: DvMF_1916 - zinc/iron permease (RefSeq), at 2,361,327 to 2,362,139 _1916 Position (kb) 2360 2361Strain fitness (log2 ratio) -2 -1 0 1at 2359.752 kb on - strand, within DvMF_1914at 2359.752 kb on - strand, within DvMF_1914at 2359.826 kb on - strand, within DvMF_1914at 2359.912 kb on + strand, within DvMF_1914at 2360.093 kb on + strand, within DvMF_1914at 2360.134 kb on + strand, within DvMF_1914at 2360.206 kb on + strand, within DvMF_1914at 2360.364 kb on + strand, within DvMF_1914at 2360.442 kb on + strand, within DvMF_1914at 2360.450 kb on - strand, within DvMF_1914at 2360.467 kb on + strand, within DvMF_1914at 2360.533 kb on - strandat 2360.533 kb on - strandat 2360.540 kb on - strandat 2360.612 kb on - strandat 2360.729 kb on - strand, within DvMF_1915at 2360.763 kb on - strand, within DvMF_1915at 2360.808 kb on - strand, within DvMF_1915at 2361.280 kb on + strandat 2361.301 kb on + strandat 2361.326 kb on + strandat 2361.360 kb on + strandat 2361.428 kb on - strand, within DvMF_1916at 2361.628 kb on + strand, within DvMF_1916at 2361.693 kb on - strand, within DvMF_1916at 2361.844 kb on + strand, within DvMF_1916

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml
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2,359,752 - DvMF_1914 0.25 +0.8
2,359,752 - DvMF_1914 0.25 -0.3
2,359,826 - DvMF_1914 0.31 +0.0
2,359,912 + DvMF_1914 0.38 -0.4
2,360,093 + DvMF_1914 0.53 -0.5
2,360,134 + DvMF_1914 0.57 -0.6
2,360,206 + DvMF_1914 0.63 +0.7
2,360,364 + DvMF_1914 0.76 -0.4
2,360,442 + DvMF_1914 0.83 -0.6
2,360,450 - DvMF_1914 0.84 -0.3
2,360,467 + DvMF_1914 0.85 +0.0
2,360,533 - -1.1
2,360,533 - +0.3
2,360,540 - -0.4
2,360,612 - -1.8
2,360,729 - DvMF_1915 0.13 +0.9
2,360,763 - DvMF_1915 0.25 +0.1
2,360,808 - DvMF_1915 0.40 +0.1
2,361,280 + -2.3
2,361,301 + -0.9
2,361,326 + -0.1
2,361,360 + -1.1
2,361,428 - DvMF_1916 0.12 -1.3
2,361,628 + DvMF_1916 0.37 -0.8
2,361,693 - DvMF_1916 0.45 -0.7
2,361,844 + DvMF_1916 0.64 +1.2

Or see this region's nucleotide sequence