Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1465

Experiment: MoYLS4 with A22 0.0875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1464 and DvMF_1465 are separated by 586 nucleotidesDvMF_1465 and DvMF_1466 are separated by 257 nucleotidesDvMF_1466 and DvMF_1467 are separated by 369 nucleotides DvMF_1464: DvMF_1464 - Homocysteine formation from aspartate semialdehyde (DUF39 component) (from data), at 1,794,909 to 1,796,081 _1464 DvMF_1465: DvMF_1465 - hypothetical protein (RefSeq), at 1,796,668 to 1,797,522 _1465 DvMF_1466: DvMF_1466 - hypothetical protein (RefSeq), at 1,797,780 to 1,797,890 _1466 DvMF_1467: DvMF_1467 - regulatory protein, FmdB family (RefSeq), at 1,798,260 to 1,798,676 _1467 Position (kb) 1796 1797 1798Strain fitness (log2 ratio) -2 -1 0 1at 1795.692 kb on - strand, within DvMF_1464at 1795.699 kb on - strand, within DvMF_1464at 1795.993 kb on + strandat 1796.001 kb on - strandat 1796.083 kb on + strandat 1796.260 kb on + strandat 1796.485 kb on + strandat 1796.515 kb on + strandat 1796.520 kb on - strandat 1796.608 kb on - strandat 1796.740 kb on - strandat 1796.899 kb on - strand, within DvMF_1465at 1797.108 kb on + strand, within DvMF_1465at 1797.306 kb on - strand, within DvMF_1465at 1797.449 kb on - strandat 1797.708 kb on + strandat 1797.760 kb on + strandat 1797.884 kb on + strandat 1797.892 kb on - strandat 1798.187 kb on - strandat 1798.224 kb on - strandat 1798.350 kb on + strand, within DvMF_1467

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml
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1,795,692 - DvMF_1464 0.67 -0.6
1,795,699 - DvMF_1464 0.67 -0.8
1,795,993 + -0.5
1,796,001 - -0.2
1,796,083 + -1.1
1,796,260 + -0.4
1,796,485 + -0.8
1,796,515 + -0.8
1,796,520 - -0.4
1,796,608 - -1.0
1,796,740 - -0.3
1,796,899 - DvMF_1465 0.27 -1.8
1,797,108 + DvMF_1465 0.51 -1.3
1,797,306 - DvMF_1465 0.75 -0.4
1,797,449 - -0.5
1,797,708 + -2.5
1,797,760 + -1.0
1,797,884 + +0.2
1,797,892 - +1.1
1,798,187 - -0.9
1,798,224 - -0.4
1,798,350 + DvMF_1467 0.22 -1.0

Or see this region's nucleotide sequence