Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1162

Experiment: MoYLS4 with A22 0.0875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1161 and DvMF_1162 are separated by 119 nucleotidesDvMF_1162 and DvMF_1163 overlap by 1 nucleotidesDvMF_1163 and DvMF_1164 are separated by 12 nucleotides DvMF_1161: DvMF_1161 - Hemolysin-type calcium-binding region (RefSeq), at 1,429,589 to 1,437,202 _1161 DvMF_1162: DvMF_1162 - ABC transporter related (RefSeq), at 1,437,322 to 1,438,047 _1162 DvMF_1163: DvMF_1163 - ABC transporter related (RefSeq), at 1,438,047 to 1,438,814 _1163 DvMF_1164: DvMF_1164 - inner-membrane translocator (RefSeq), at 1,438,827 to 1,439,903 _1164 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -1 0 1at 1436.368 kb on - strand, within DvMF_1161at 1436.472 kb on - strandat 1436.703 kb on - strandat 1436.732 kb on - strandat 1437.209 kb on + strandat 1437.272 kb on + strandat 1437.335 kb on - strandat 1437.536 kb on + strand, within DvMF_1162at 1437.910 kb on + strand, within DvMF_1162at 1438.303 kb on - strand, within DvMF_1163at 1438.338 kb on - strand, within DvMF_1163at 1438.542 kb on - strand, within DvMF_1163at 1439.010 kb on - strand, within DvMF_1164at 1439.014 kb on - strand, within DvMF_1164

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml
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1,436,368 - DvMF_1161 0.89 -0.6
1,436,472 - -0.6
1,436,703 - -0.0
1,436,732 - +1.2
1,437,209 + -0.6
1,437,272 + -0.9
1,437,335 - -0.6
1,437,536 + DvMF_1162 0.29 +0.1
1,437,910 + DvMF_1162 0.81 -0.8
1,438,303 - DvMF_1163 0.33 +0.5
1,438,338 - DvMF_1163 0.38 -0.3
1,438,542 - DvMF_1163 0.64 -0.8
1,439,010 - DvMF_1164 0.17 -0.7
1,439,014 - DvMF_1164 0.17 -0.0

Or see this region's nucleotide sequence