Experiment: MoYLS4 with A22 0.0875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1158 and DvMF_1159 overlap by 1 nucleotides DvMF_1159 and DvMF_1160 are separated by 165 nucleotides
DvMF_1158: DvMF_1158 - transglutaminase family protein cysteine peptidase BTLCP (RefSeq), at 1,422,747 to 1,424,039
_1158
DvMF_1159: DvMF_1159 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 1,424,039 to 1,425,439
_1159
DvMF_1160: DvMF_1160 - cyclic nucleotide-binding protein (RefSeq), at 1,425,605 to 1,427,809
_1160
Position (kb)
1424
1425
1426 Strain fitness (log2 ratio)
-2
-1
0
1 at 1423.188 kb on + strand, within DvMF_1158 at 1423.355 kb on - strand, within DvMF_1158 at 1423.601 kb on + strand, within DvMF_1158 at 1424.093 kb on + strand at 1424.233 kb on + strand, within DvMF_1159 at 1424.294 kb on + strand, within DvMF_1159 at 1424.306 kb on + strand, within DvMF_1159 at 1424.488 kb on + strand, within DvMF_1159 at 1424.488 kb on + strand, within DvMF_1159 at 1424.496 kb on - strand, within DvMF_1159 at 1424.701 kb on + strand, within DvMF_1159 at 1424.709 kb on - strand, within DvMF_1159 at 1424.709 kb on - strand, within DvMF_1159 at 1424.709 kb on - strand, within DvMF_1159 at 1424.768 kb on - strand, within DvMF_1159 at 1425.101 kb on + strand, within DvMF_1159 at 1425.166 kb on - strand, within DvMF_1159 at 1425.310 kb on - strand at 1425.401 kb on - strand at 1425.662 kb on - strand at 1425.937 kb on - strand, within DvMF_1160 at 1425.942 kb on + strand, within DvMF_1160 at 1425.989 kb on - strand, within DvMF_1160 at 1426.071 kb on + strand, within DvMF_1160 at 1426.172 kb on - strand, within DvMF_1160 at 1426.257 kb on - strand, within DvMF_1160
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml remove 1,423,188 + DvMF_1158 0.34 -2.1 1,423,355 - DvMF_1158 0.47 -2.1 1,423,601 + DvMF_1158 0.66 -1.0 1,424,093 + +0.8 1,424,233 + DvMF_1159 0.14 -0.9 1,424,294 + DvMF_1159 0.18 +0.3 1,424,306 + DvMF_1159 0.19 -0.2 1,424,488 + DvMF_1159 0.32 +0.1 1,424,488 + DvMF_1159 0.32 +0.1 1,424,496 - DvMF_1159 0.33 -0.1 1,424,701 + DvMF_1159 0.47 -0.0 1,424,709 - DvMF_1159 0.48 -0.0 1,424,709 - DvMF_1159 0.48 -0.2 1,424,709 - DvMF_1159 0.48 +0.2 1,424,768 - DvMF_1159 0.52 -0.2 1,425,101 + DvMF_1159 0.76 +0.5 1,425,166 - DvMF_1159 0.80 -1.0 1,425,310 - -0.2 1,425,401 - -1.2 1,425,662 - -1.1 1,425,937 - DvMF_1160 0.15 -0.1 1,425,942 + DvMF_1160 0.15 -0.3 1,425,989 - DvMF_1160 0.17 -0.5 1,426,071 + DvMF_1160 0.21 -0.4 1,426,172 - DvMF_1160 0.26 +0.4 1,426,257 - DvMF_1160 0.30 +0.1
Or see this region's nucleotide sequence