Experiment: MoYLS4 with A22 0.0875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0863 and DvMF_0864 are separated by 536 nucleotides DvMF_0864 and DvMF_0865 are separated by 90 nucleotides DvMF_0865 and DvMF_0866 are separated by 84 nucleotides
DvMF_0863: DvMF_0863 - hypothetical protein (RefSeq), at 1,039,060 to 1,039,740
_0863
DvMF_0864: DvMF_0864 - UTP-GlnB uridylyltransferase, GlnD (RefSeq), at 1,040,277 to 1,043,180
_0864
DvMF_0865: DvMF_0865 - nitrogen regulatory protein P-II (RefSeq), at 1,043,271 to 1,043,609
_0865
DvMF_0866: DvMF_0866 - ammonium transporter (RefSeq), at 1,043,694 to 1,044,902
_0866
Position (kb)
1040
1041
1042
1043
1044 Strain fitness (log2 ratio)
-2
-1
0
1 at 1039.401 kb on - strand, within DvMF_0863 at 1040.295 kb on + strand at 1040.340 kb on + strand at 1040.460 kb on - strand at 1040.460 kb on - strand at 1040.714 kb on + strand, within DvMF_0864 at 1040.882 kb on - strand, within DvMF_0864 at 1040.920 kb on - strand, within DvMF_0864 at 1041.028 kb on + strand, within DvMF_0864 at 1041.137 kb on - strand, within DvMF_0864 at 1041.222 kb on + strand, within DvMF_0864 at 1041.437 kb on - strand, within DvMF_0864 at 1041.524 kb on + strand, within DvMF_0864 at 1041.617 kb on - strand, within DvMF_0864 at 1041.718 kb on - strand, within DvMF_0864 at 1041.722 kb on - strand, within DvMF_0864 at 1042.010 kb on - strand, within DvMF_0864 at 1042.104 kb on - strand, within DvMF_0864 at 1042.104 kb on - strand, within DvMF_0864 at 1042.109 kb on - strand, within DvMF_0864 at 1042.197 kb on + strand, within DvMF_0864 at 1042.383 kb on + strand, within DvMF_0864 at 1042.461 kb on + strand, within DvMF_0864 at 1042.713 kb on + strand, within DvMF_0864 at 1042.733 kb on - strand, within DvMF_0864 at 1042.738 kb on + strand, within DvMF_0864 at 1042.786 kb on + strand, within DvMF_0864 at 1042.833 kb on + strand, within DvMF_0864 at 1043.082 kb on - strand at 1043.369 kb on - strand, within DvMF_0865 at 1043.477 kb on - strand, within DvMF_0865 at 1043.523 kb on + strand, within DvMF_0865 at 1043.877 kb on - strand, within DvMF_0866 at 1043.893 kb on - strand, within DvMF_0866 at 1044.106 kb on - strand, within DvMF_0866
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml remove 1,039,401 - DvMF_0863 0.50 -1.3 1,040,295 + -1.7 1,040,340 + -0.6 1,040,460 - -1.1 1,040,460 - +0.6 1,040,714 + DvMF_0864 0.15 -0.6 1,040,882 - DvMF_0864 0.21 -0.8 1,040,920 - DvMF_0864 0.22 -0.4 1,041,028 + DvMF_0864 0.26 -1.7 1,041,137 - DvMF_0864 0.30 -0.2 1,041,222 + DvMF_0864 0.33 -0.1 1,041,437 - DvMF_0864 0.40 -0.5 1,041,524 + DvMF_0864 0.43 -0.3 1,041,617 - DvMF_0864 0.46 -0.3 1,041,718 - DvMF_0864 0.50 -1.5 1,041,722 - DvMF_0864 0.50 -0.6 1,042,010 - DvMF_0864 0.60 +1.4 1,042,104 - DvMF_0864 0.63 -0.6 1,042,104 - DvMF_0864 0.63 -1.5 1,042,109 - DvMF_0864 0.63 +0.9 1,042,197 + DvMF_0864 0.66 -0.8 1,042,383 + DvMF_0864 0.73 -0.5 1,042,461 + DvMF_0864 0.75 +0.0 1,042,713 + DvMF_0864 0.84 -0.7 1,042,733 - DvMF_0864 0.85 -0.5 1,042,738 + DvMF_0864 0.85 -1.8 1,042,786 + DvMF_0864 0.86 -0.0 1,042,833 + DvMF_0864 0.88 -0.7 1,043,082 - -0.7 1,043,369 - DvMF_0865 0.29 -0.5 1,043,477 - DvMF_0865 0.61 -1.7 1,043,523 + DvMF_0865 0.74 -1.2 1,043,877 - DvMF_0866 0.15 -0.1 1,043,893 - DvMF_0866 0.16 -0.3 1,044,106 - DvMF_0866 0.34 -0.8
Or see this region's nucleotide sequence