Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0864

Experiment: MoYLS4 with A22 0.0875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0863 and DvMF_0864 are separated by 536 nucleotidesDvMF_0864 and DvMF_0865 are separated by 90 nucleotidesDvMF_0865 and DvMF_0866 are separated by 84 nucleotides DvMF_0863: DvMF_0863 - hypothetical protein (RefSeq), at 1,039,060 to 1,039,740 _0863 DvMF_0864: DvMF_0864 - UTP-GlnB uridylyltransferase, GlnD (RefSeq), at 1,040,277 to 1,043,180 _0864 DvMF_0865: DvMF_0865 - nitrogen regulatory protein P-II (RefSeq), at 1,043,271 to 1,043,609 _0865 DvMF_0866: DvMF_0866 - ammonium transporter (RefSeq), at 1,043,694 to 1,044,902 _0866 Position (kb) 1040 1041 1042 1043 1044Strain fitness (log2 ratio) -2 -1 0 1at 1039.401 kb on - strand, within DvMF_0863at 1040.295 kb on + strandat 1040.340 kb on + strandat 1040.460 kb on - strandat 1040.460 kb on - strandat 1040.714 kb on + strand, within DvMF_0864at 1040.882 kb on - strand, within DvMF_0864at 1040.920 kb on - strand, within DvMF_0864at 1041.028 kb on + strand, within DvMF_0864at 1041.137 kb on - strand, within DvMF_0864at 1041.222 kb on + strand, within DvMF_0864at 1041.437 kb on - strand, within DvMF_0864at 1041.524 kb on + strand, within DvMF_0864at 1041.617 kb on - strand, within DvMF_0864at 1041.718 kb on - strand, within DvMF_0864at 1041.722 kb on - strand, within DvMF_0864at 1042.010 kb on - strand, within DvMF_0864at 1042.104 kb on - strand, within DvMF_0864at 1042.104 kb on - strand, within DvMF_0864at 1042.109 kb on - strand, within DvMF_0864at 1042.197 kb on + strand, within DvMF_0864at 1042.383 kb on + strand, within DvMF_0864at 1042.461 kb on + strand, within DvMF_0864at 1042.713 kb on + strand, within DvMF_0864at 1042.733 kb on - strand, within DvMF_0864at 1042.738 kb on + strand, within DvMF_0864at 1042.786 kb on + strand, within DvMF_0864at 1042.833 kb on + strand, within DvMF_0864at 1043.082 kb on - strandat 1043.369 kb on - strand, within DvMF_0865at 1043.477 kb on - strand, within DvMF_0865at 1043.523 kb on + strand, within DvMF_0865at 1043.877 kb on - strand, within DvMF_0866at 1043.893 kb on - strand, within DvMF_0866at 1044.106 kb on - strand, within DvMF_0866

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml
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1,039,401 - DvMF_0863 0.50 -1.3
1,040,295 + -1.7
1,040,340 + -0.6
1,040,460 - -1.1
1,040,460 - +0.6
1,040,714 + DvMF_0864 0.15 -0.6
1,040,882 - DvMF_0864 0.21 -0.8
1,040,920 - DvMF_0864 0.22 -0.4
1,041,028 + DvMF_0864 0.26 -1.7
1,041,137 - DvMF_0864 0.30 -0.2
1,041,222 + DvMF_0864 0.33 -0.1
1,041,437 - DvMF_0864 0.40 -0.5
1,041,524 + DvMF_0864 0.43 -0.3
1,041,617 - DvMF_0864 0.46 -0.3
1,041,718 - DvMF_0864 0.50 -1.5
1,041,722 - DvMF_0864 0.50 -0.6
1,042,010 - DvMF_0864 0.60 +1.4
1,042,104 - DvMF_0864 0.63 -0.6
1,042,104 - DvMF_0864 0.63 -1.5
1,042,109 - DvMF_0864 0.63 +0.9
1,042,197 + DvMF_0864 0.66 -0.8
1,042,383 + DvMF_0864 0.73 -0.5
1,042,461 + DvMF_0864 0.75 +0.0
1,042,713 + DvMF_0864 0.84 -0.7
1,042,733 - DvMF_0864 0.85 -0.5
1,042,738 + DvMF_0864 0.85 -1.8
1,042,786 + DvMF_0864 0.86 -0.0
1,042,833 + DvMF_0864 0.88 -0.7
1,043,082 - -0.7
1,043,369 - DvMF_0865 0.29 -0.5
1,043,477 - DvMF_0865 0.61 -1.7
1,043,523 + DvMF_0865 0.74 -1.2
1,043,877 - DvMF_0866 0.15 -0.1
1,043,893 - DvMF_0866 0.16 -0.3
1,044,106 - DvMF_0866 0.34 -0.8

Or see this region's nucleotide sequence