Experiment: MoYLS4 with A22 0.0875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0678 and DvMF_0679 overlap by 4 nucleotides DvMF_0679 and DvMF_0680 are separated by 63 nucleotides
DvMF_0678: DvMF_0678 - polysaccharide biosynthesis protein (RefSeq), at 817,648 to 819,147
_0678
DvMF_0679: DvMF_0679 - O-antigen polymerase (RefSeq), at 819,144 to 820,457
_0679
DvMF_0680: DvMF_0680 - hypothetical protein (RefSeq), at 820,521 to 821,840
_0680
Position (kb) 819
820
821 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 818.322 kb on + strand, within DvMF_0678 at 818.322 kb on + strand, within DvMF_0678 at 818.387 kb on + strand, within DvMF_0678 at 818.395 kb on - strand, within DvMF_0678 at 818.461 kb on - strand, within DvMF_0678 at 818.485 kb on + strand, within DvMF_0678 at 818.564 kb on - strand, within DvMF_0678 at 818.601 kb on + strand, within DvMF_0678 at 818.601 kb on + strand, within DvMF_0678 at 818.609 kb on - strand, within DvMF_0678 at 818.822 kb on + strand, within DvMF_0678 at 818.822 kb on + strand, within DvMF_0678 at 818.891 kb on + strand, within DvMF_0678 at 819.235 kb on + strand at 819.345 kb on - strand, within DvMF_0679 at 819.624 kb on + strand, within DvMF_0679 at 819.930 kb on - strand, within DvMF_0679 at 820.185 kb on + strand, within DvMF_0679 at 820.213 kb on + strand, within DvMF_0679 at 820.510 kb on - strand at 820.737 kb on + strand, within DvMF_0680 at 820.834 kb on - strand, within DvMF_0680 at 820.882 kb on - strand, within DvMF_0680 at 820.973 kb on + strand, within DvMF_0680 at 820.981 kb on - strand, within DvMF_0680 at 820.999 kb on - strand, within DvMF_0680 at 821.061 kb on - strand, within DvMF_0680 at 821.098 kb on - strand, within DvMF_0680 at 821.144 kb on - strand, within DvMF_0680 at 821.194 kb on + strand, within DvMF_0680 at 821.449 kb on + strand, within DvMF_0680
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml remove 818,322 + DvMF_0678 0.45 -0.9 818,322 + DvMF_0678 0.45 -0.6 818,387 + DvMF_0678 0.49 -0.9 818,395 - DvMF_0678 0.50 +0.4 818,461 - DvMF_0678 0.54 -0.1 818,485 + DvMF_0678 0.56 -0.4 818,564 - DvMF_0678 0.61 -1.6 818,601 + DvMF_0678 0.64 -0.7 818,601 + DvMF_0678 0.64 -1.1 818,609 - DvMF_0678 0.64 -1.4 818,822 + DvMF_0678 0.78 -1.7 818,822 + DvMF_0678 0.78 -0.8 818,891 + DvMF_0678 0.83 -0.6 819,235 + -1.1 819,345 - DvMF_0679 0.15 -1.3 819,624 + DvMF_0679 0.37 -0.3 819,930 - DvMF_0679 0.60 -0.8 820,185 + DvMF_0679 0.79 -0.9 820,213 + DvMF_0679 0.81 -0.6 820,510 - -1.1 820,737 + DvMF_0680 0.16 -0.7 820,834 - DvMF_0680 0.24 -0.4 820,882 - DvMF_0680 0.27 -1.0 820,973 + DvMF_0680 0.34 +0.1 820,981 - DvMF_0680 0.35 +0.2 820,999 - DvMF_0680 0.36 -4.3 821,061 - DvMF_0680 0.41 -0.7 821,098 - DvMF_0680 0.44 -1.1 821,144 - DvMF_0680 0.47 -0.2 821,194 + DvMF_0680 0.51 -1.7 821,449 + DvMF_0680 0.70 -0.8
Or see this region's nucleotide sequence