Experiment: MoYLS4 with A22 0.0875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0567 and DvMF_0568 are separated by 196 nucleotides DvMF_0568 and DvMF_0569 are separated by 66 nucleotides DvMF_0569 and DvMF_0570 are separated by 374 nucleotides
DvMF_0567: DvMF_0567 - ATP-dependent chaperone ClpB (RefSeq), at 668,868 to 671,456
_0567
DvMF_0568: DvMF_0568 - hypothetical protein (RefSeq), at 671,653 to 672,003
_0568
DvMF_0569: DvMF_0569 - chaperone DnaJ domain protein (RefSeq), at 672,070 to 673,026
_0569
DvMF_0570: DvMF_0570 - polysaccharide deacetylase (RefSeq), at 673,401 to 674,552
_0570
Position (kb) 672
673
674 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 671.073 kb on + strand, within DvMF_0567 at 671.118 kb on - strand, within DvMF_0567 at 671.148 kb on - strand, within DvMF_0567 at 671.247 kb on + strand at 671.644 kb on + strand at 671.664 kb on + strand at 671.730 kb on + strand, within DvMF_0568 at 671.738 kb on - strand, within DvMF_0568 at 671.738 kb on - strand, within DvMF_0568 at 671.835 kb on + strand, within DvMF_0568 at 671.850 kb on + strand, within DvMF_0568 at 671.878 kb on + strand, within DvMF_0568 at 671.975 kb on - strand at 672.204 kb on - strand, within DvMF_0569 at 672.395 kb on - strand, within DvMF_0569 at 672.525 kb on + strand, within DvMF_0569 at 672.723 kb on + strand, within DvMF_0569 at 672.731 kb on - strand, within DvMF_0569 at 672.951 kb on + strand at 673.265 kb on - strand at 673.330 kb on - strand at 673.704 kb on + strand, within DvMF_0570 at 673.743 kb on - strand, within DvMF_0570 at 673.769 kb on - strand, within DvMF_0570
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml remove 671,073 + DvMF_0567 0.85 -0.3 671,118 - DvMF_0567 0.87 -0.6 671,148 - DvMF_0567 0.88 +0.1 671,247 + -3.0 671,644 + -1.5 671,664 + +0.7 671,730 + DvMF_0568 0.22 -0.8 671,738 - DvMF_0568 0.24 -0.5 671,738 - DvMF_0568 0.24 -1.6 671,835 + DvMF_0568 0.52 -0.8 671,850 + DvMF_0568 0.56 -0.1 671,878 + DvMF_0568 0.64 +0.5 671,975 - +0.2 672,204 - DvMF_0569 0.14 -2.1 672,395 - DvMF_0569 0.34 -2.5 672,525 + DvMF_0569 0.48 -0.1 672,723 + DvMF_0569 0.68 -0.5 672,731 - DvMF_0569 0.69 -1.8 672,951 + -2.6 673,265 - -0.8 673,330 - -2.3 673,704 + DvMF_0570 0.26 -1.7 673,743 - DvMF_0570 0.30 +0.9 673,769 - DvMF_0570 0.32 +0.3
Or see this region's nucleotide sequence