Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0561

Experiment: MoYLS4 with A22 0.0875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0559 and DvMF_0560 are separated by 39 nucleotidesDvMF_0560 and dapF are separated by 52 nucleotidesdapF and DvMF_0562 are separated by 132 nucleotides DvMF_0559: DvMF_0559 - collagen triple helix repeat protein (RefSeq), at 659,202 to 659,684 _0559 DvMF_0560: DvMF_0560 - hypothetical protein (RefSeq), at 659,724 to 660,458 _0560 DvMF_0561: dapF - diaminopimelate epimerase (RefSeq), at 660,511 to 661,359 dapF DvMF_0562: DvMF_0562 - dihydrodipicolinate synthase (RefSeq), at 661,492 to 662,370 _0562 Position (kb) 660 661 662Strain fitness (log2 ratio) -2 -1 0 1at 659.562 kb on + strand, within DvMF_0559at 659.628 kb on - strand, within DvMF_0559at 660.236 kb on - strand, within DvMF_0560at 660.316 kb on - strand, within DvMF_0560at 660.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml
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659,562 + DvMF_0559 0.75 -0.8
659,628 - DvMF_0559 0.88 -1.8
660,236 - DvMF_0560 0.70 -1.7
660,316 - DvMF_0560 0.81 -0.5
660,395 - -0.8

Or see this region's nucleotide sequence