Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0471

Experiment: MoYLS4 with A22 0.0875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0470 and DvMF_0471 are separated by 410 nucleotidesDvMF_0471 and DvMF_0472 are separated by 9 nucleotides DvMF_0470: DvMF_0470 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 550,733 to 552,838 _0470 DvMF_0471: DvMF_0471 - DNA repair protein RadA (RefSeq), at 553,249 to 554,727 _0471 DvMF_0472: DvMF_0472 - hypothetical protein (RefSeq), at 554,737 to 555,705 _0472 Position (kb) 553 554 555Strain fitness (log2 ratio) -2 -1 0 1at 552.277 kb on + strand, within DvMF_0470at 552.303 kb on - strand, within DvMF_0470at 552.590 kb on - strand, within DvMF_0470at 552.591 kb on + strand, within DvMF_0470at 552.706 kb on + strandat 552.779 kb on + strandat 552.865 kb on + strandat 553.019 kb on + strandat 553.074 kb on + strandat 553.544 kb on + strandat 553.852 kb on - strand, within DvMF_0471at 553.862 kb on - strand, within DvMF_0471at 553.883 kb on + strand, within DvMF_0471at 553.987 kb on - strand, within DvMF_0471at 554.171 kb on + strand, within DvMF_0471at 554.525 kb on - strand, within DvMF_0471at 554.613 kb on - strandat 554.628 kb on + strandat 554.628 kb on + strandat 554.628 kb on + strandat 554.636 kb on - strandat 554.827 kb on - strandat 554.847 kb on - strand, within DvMF_0472at 555.112 kb on + strand, within DvMF_0472at 555.227 kb on - strand, within DvMF_0472at 555.255 kb on + strand, within DvMF_0472at 555.315 kb on - strand, within DvMF_0472at 555.464 kb on + strand, within DvMF_0472at 555.619 kb on - strandat 555.619 kb on - strandat 555.631 kb on - strandat 555.666 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml
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552,277 + DvMF_0470 0.73 -1.1
552,303 - DvMF_0470 0.75 -0.8
552,590 - DvMF_0470 0.88 -0.1
552,591 + DvMF_0470 0.88 -0.9
552,706 + +0.1
552,779 + -0.3
552,865 + -0.1
553,019 + -1.8
553,074 + -0.1
553,544 + +0.9
553,852 - DvMF_0471 0.41 -1.7
553,862 - DvMF_0471 0.41 -1.7
553,883 + DvMF_0471 0.43 -1.4
553,987 - DvMF_0471 0.50 -1.4
554,171 + DvMF_0471 0.62 -0.1
554,525 - DvMF_0471 0.86 +0.1
554,613 - -0.7
554,628 + +0.4
554,628 + -0.5
554,628 + +0.1
554,636 - -0.2
554,827 - -1.3
554,847 - DvMF_0472 0.11 -1.1
555,112 + DvMF_0472 0.39 -2.4
555,227 - DvMF_0472 0.51 -0.8
555,255 + DvMF_0472 0.53 -0.6
555,315 - DvMF_0472 0.60 -0.9
555,464 + DvMF_0472 0.75 -0.3
555,619 - -1.7
555,619 - -0.7
555,631 - -0.0
555,666 + -0.6

Or see this region's nucleotide sequence