Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0383

Experiment: MoYLS4 with A22 0.0875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0382 and greA are separated by 272 nucleotidesgreA and DvMF_0384 are separated by 424 nucleotidesDvMF_0384 and DvMF_0385 are separated by 126 nucleotides DvMF_0382: DvMF_0382 - phosphate uptake regulator, PhoU (RefSeq), at 450,195 to 450,878 _0382 DvMF_0383: greA - transcription elongation factor GreA (RefSeq), at 451,151 to 451,633 greA DvMF_0384: DvMF_0384 - hypothetical protein (RefSeq), at 452,058 to 452,252 _0384 DvMF_0385: DvMF_0385 - hypothetical protein (RefSeq), at 452,379 to 452,804 _0385 Position (kb) 451 452Strain fitness (log2 ratio) -2 -1 0 1at 450.264 kb on + strand, within DvMF_0382at 450.373 kb on + strand, within DvMF_0382at 450.381 kb on - strand, within DvMF_0382at 450.388 kb on - strand, within DvMF_0382at 450.389 kb on + strand, within DvMF_0382at 450.516 kb on - strand, within DvMF_0382at 450.624 kb on + strand, within DvMF_0382at 450.644 kb on - strand, within DvMF_0382at 450.861 kb on - strandat 451.245 kb on - strand, within greAat 451.427 kb on + strand, within greAat 451.429 kb on - strand, within greAat 451.429 kb on - strand, within greAat 451.429 kb on - strand, within greAat 451.598 kb on + strandat 451.717 kb on + strandat 451.862 kb on - strandat 451.898 kb on + strandat 452.605 kb on + strand, within DvMF_0385

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml
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450,264 + DvMF_0382 0.10 -0.2
450,373 + DvMF_0382 0.26 -2.0
450,381 - DvMF_0382 0.27 -0.3
450,388 - DvMF_0382 0.28 -0.5
450,389 + DvMF_0382 0.28 -0.5
450,516 - DvMF_0382 0.47 -0.9
450,624 + DvMF_0382 0.63 -0.9
450,644 - DvMF_0382 0.66 -1.2
450,861 - -0.4
451,245 - greA DvMF_0383 0.19 -0.4
451,427 + greA DvMF_0383 0.57 -2.0
451,429 - greA DvMF_0383 0.58 +0.1
451,429 - greA DvMF_0383 0.58 +0.7
451,429 - greA DvMF_0383 0.58 +0.1
451,598 + +1.5
451,717 + -0.9
451,862 - -0.5
451,898 + -0.4
452,605 + DvMF_0385 0.53 -0.3

Or see this region's nucleotide sequence