Experiment: MoYLS4 with A22 0.0875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0211 and DvMF_0212 are separated by 92 nucleotides DvMF_0212 and DvMF_0213 are separated by 433 nucleotides
DvMF_0211: DvMF_0211 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 232,341 to 235,571
_0211
DvMF_0212: DvMF_0212 - hypothetical protein (RefSeq), at 235,664 to 239,317
_0212
DvMF_0213: DvMF_0213 - multi-sensor signal transduction histidine kinase (RefSeq), at 239,751 to 241,919
_0213
Position (kb) 235
236
237
238
239
240 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.689 kb on - strand, within DvMF_0211 at 234.689 kb on - strand, within DvMF_0211 at 234.867 kb on - strand, within DvMF_0211 at 235.074 kb on + strand, within DvMF_0211 at 235.738 kb on - strand at 236.314 kb on - strand, within DvMF_0212 at 236.466 kb on + strand, within DvMF_0212 at 236.519 kb on + strand, within DvMF_0212 at 236.564 kb on + strand, within DvMF_0212 at 236.677 kb on + strand, within DvMF_0212 at 236.868 kb on + strand, within DvMF_0212 at 237.259 kb on + strand, within DvMF_0212 at 237.331 kb on - strand, within DvMF_0212 at 237.409 kb on + strand, within DvMF_0212 at 237.524 kb on + strand, within DvMF_0212 at 238.400 kb on - strand, within DvMF_0212 at 238.421 kb on - strand, within DvMF_0212 at 238.549 kb on - strand, within DvMF_0212 at 238.760 kb on + strand, within DvMF_0212 at 238.908 kb on + strand, within DvMF_0212 at 238.926 kb on - strand, within DvMF_0212 at 239.034 kb on - strand at 239.039 kb on - strand at 239.777 kb on + strand at 239.884 kb on + strand at 239.970 kb on - strand, within DvMF_0213 at 240.099 kb on + strand, within DvMF_0213 at 240.243 kb on - strand, within DvMF_0213 at 240.263 kb on - strand, within DvMF_0213 at 240.309 kb on - strand, within DvMF_0213
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml remove 234,681 + DvMF_0211 0.72 -0.6 234,681 + DvMF_0211 0.72 -0.4 234,681 + DvMF_0211 0.72 -0.4 234,681 + DvMF_0211 0.72 -0.4 234,689 - DvMF_0211 0.73 +0.4 234,689 - DvMF_0211 0.73 -0.6 234,867 - DvMF_0211 0.78 +0.7 235,074 + DvMF_0211 0.85 -0.3 235,738 - -1.8 236,314 - DvMF_0212 0.18 -0.5 236,466 + DvMF_0212 0.22 -4.1 236,519 + DvMF_0212 0.23 -2.8 236,564 + DvMF_0212 0.25 -0.8 236,677 + DvMF_0212 0.28 -1.0 236,868 + DvMF_0212 0.33 -1.3 237,259 + DvMF_0212 0.44 -1.2 237,331 - DvMF_0212 0.46 -1.2 237,409 + DvMF_0212 0.48 -0.9 237,524 + DvMF_0212 0.51 -0.8 238,400 - DvMF_0212 0.75 -0.7 238,421 - DvMF_0212 0.75 -0.9 238,549 - DvMF_0212 0.79 -1.9 238,760 + DvMF_0212 0.85 -1.2 238,908 + DvMF_0212 0.89 -0.6 238,926 - DvMF_0212 0.89 -1.0 239,034 - -0.8 239,039 - -2.2 239,777 + +0.6 239,884 + -0.4 239,970 - DvMF_0213 0.10 -0.0 240,099 + DvMF_0213 0.16 -1.2 240,243 - DvMF_0213 0.23 -0.8 240,263 - DvMF_0213 0.24 -1.4 240,309 - DvMF_0213 0.26 -1.0
Or see this region's nucleotide sequence