Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0156

Experiment: MoYLS4 with A22 0.0875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0155 and DvMF_0156 are separated by 395 nucleotidesDvMF_0156 and DvMF_0157 are separated by 434 nucleotidesDvMF_0157 and DvMF_0158 are separated by 213 nucleotides DvMF_0155: DvMF_0155 - ketol-acid reductoisomerase (RefSeq), at 169,782 to 170,774 _0155 DvMF_0156: DvMF_0156 - NADPH-dependent FMN reductase (RefSeq), at 171,170 to 171,736 _0156 DvMF_0157: DvMF_0157 - hypothetical protein (RefSeq), at 172,171 to 172,386 _0157 DvMF_0158: DvMF_0158 - HesB-like domain-containing protein (RefSeq), at 172,600 to 172,920 _0158 Position (kb) 171 172Strain fitness (log2 ratio) -2 -1 0 1at 170.279 kb on - strand, within DvMF_0155at 170.918 kb on + strandat 171.472 kb on + strand, within DvMF_0156at 171.732 kb on - strandat 171.786 kb on + strandat 171.987 kb on - strandat 172.020 kb on + strandat 172.196 kb on + strand, within DvMF_0157at 172.222 kb on + strand, within DvMF_0157at 172.553 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with A22 0.0875 mg/ml
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170,279 - DvMF_0155 0.50 -1.5
170,918 + +0.3
171,472 + DvMF_0156 0.53 -0.1
171,732 - -0.2
171,786 + -1.1
171,987 - -1.4
172,020 + -0.3
172,196 + DvMF_0157 0.12 -2.0
172,222 + DvMF_0157 0.24 -0.7
172,553 + +0.1

Or see this region's nucleotide sequence