Experiment: BHIS with Chloride 350 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0793 and BT0794 are separated by 102 nucleotides BT0794 and BT0795 are separated by 128 nucleotides
BT0793: BT0793 - xylose isomerase (NCBI ptt file), at 982,998 to 984,314
BT0793
BT0794: BT0794 - D-xylose-proton symporter (D-xylose transporter) (NCBI ptt file), at 984,417 to 985,871
BT0794
BT0795: BT0795 - conserved hypothetical protein (NCBI ptt file), at 986,000 to 986,620
BT0795
Position (kb) 984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 983.452 kb on - strand, within BT0793 at 983.586 kb on - strand, within BT0793 at 983.863 kb on + strand, within BT0793 at 983.966 kb on + strand, within BT0793 at 984.035 kb on + strand, within BT0793 at 984.056 kb on + strand, within BT0793 at 984.139 kb on - strand, within BT0793 at 984.141 kb on - strand, within BT0793 at 984.306 kb on + strand at 984.307 kb on - strand at 984.307 kb on - strand at 984.313 kb on - strand at 984.317 kb on - strand at 984.423 kb on - strand at 984.464 kb on + strand at 984.465 kb on - strand at 984.575 kb on + strand, within BT0794 at 984.597 kb on - strand, within BT0794 at 984.675 kb on - strand, within BT0794 at 984.915 kb on - strand, within BT0794 at 985.056 kb on + strand, within BT0794 at 985.057 kb on - strand, within BT0794 at 985.259 kb on + strand, within BT0794 at 985.259 kb on + strand, within BT0794 at 985.264 kb on - strand, within BT0794 at 985.270 kb on + strand, within BT0794 at 985.338 kb on + strand, within BT0794 at 985.341 kb on + strand, within BT0794 at 985.415 kb on - strand, within BT0794 at 985.451 kb on - strand, within BT0794 at 985.535 kb on + strand, within BT0794 at 985.568 kb on + strand, within BT0794 at 985.576 kb on + strand, within BT0794 at 985.576 kb on + strand, within BT0794 at 985.649 kb on + strand, within BT0794 at 985.701 kb on + strand, within BT0794 at 985.709 kb on - strand, within BT0794 at 985.758 kb on - strand at 985.763 kb on - strand at 985.891 kb on - strand at 985.958 kb on + strand at 986.060 kb on - strand at 986.061 kb on + strand at 986.061 kb on + strand at 986.062 kb on - strand, within BT0795 at 986.205 kb on - strand, within BT0795 at 986.423 kb on + strand, within BT0795 at 986.466 kb on - strand, within BT0795 at 986.469 kb on - strand, within BT0795 at 986.484 kb on - strand, within BT0795 at 986.488 kb on + strand, within BT0795 at 986.489 kb on - strand, within BT0795 at 986.515 kb on + strand, within BT0795 at 986.560 kb on - strand at 986.658 kb on - strand at 986.658 kb on - strand at 986.729 kb on - strand at 986.739 kb on - strand at 986.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Chloride 350 mM remove 983,452 - BT0793 0.34 -0.9 983,586 - BT0793 0.45 -3.0 983,863 + BT0793 0.66 -2.2 983,966 + BT0793 0.74 +1.5 984,035 + BT0793 0.79 -2.3 984,056 + BT0793 0.80 -0.1 984,139 - BT0793 0.87 -0.1 984,141 - BT0793 0.87 +1.2 984,306 + +1.0 984,307 - -0.7 984,307 - +0.3 984,313 - +0.5 984,317 - -1.7 984,423 - -2.0 984,464 + +0.0 984,465 - -1.8 984,575 + BT0794 0.11 +0.5 984,597 - BT0794 0.12 +1.5 984,675 - BT0794 0.18 -3.0 984,915 - BT0794 0.34 -0.5 985,056 + BT0794 0.44 -1.5 985,057 - BT0794 0.44 -1.8 985,259 + BT0794 0.58 +0.4 985,259 + BT0794 0.58 -1.9 985,264 - BT0794 0.58 +1.7 985,270 + BT0794 0.59 -1.6 985,338 + BT0794 0.63 -1.8 985,341 + BT0794 0.64 +1.5 985,415 - BT0794 0.69 -0.5 985,451 - BT0794 0.71 -1.5 985,535 + BT0794 0.77 -1.3 985,568 + BT0794 0.79 +1.5 985,576 + BT0794 0.80 -1.5 985,576 + BT0794 0.80 -0.3 985,649 + BT0794 0.85 +0.5 985,701 + BT0794 0.88 -1.6 985,709 - BT0794 0.89 -1.1 985,758 - +0.5 985,763 - +0.0 985,891 - -1.4 985,958 + -1.7 986,060 - -0.5 986,061 + +0.9 986,061 + +0.7 986,062 - BT0795 0.10 +0.0 986,205 - BT0795 0.33 -1.3 986,423 + BT0795 0.68 -0.5 986,466 - BT0795 0.75 -0.1 986,469 - BT0795 0.76 -2.1 986,484 - BT0795 0.78 -2.3 986,488 + BT0795 0.79 -2.1 986,489 - BT0795 0.79 -0.5 986,515 + BT0795 0.83 -2.1 986,560 - +1.0 986,658 - +0.2 986,658 - -0.5 986,729 - -0.4 986,739 - -0.9 986,783 - -3.1
Or see this region's nucleotide sequence