Experiment: BHIS with Chloride 350 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0171 and BT0172 are separated by 114 nucleotides
BT0171: BT0171 - conserved hypothetical protein (NCBI ptt file), at 179,107 to 180,390
BT0171
BT0172: BT0172 - hypothetical protein (NCBI ptt file), at 180,505 to 180,900
BT0172
Position (kb) 180
181 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 179.550 kb on + strand, within BT0171 at 179.552 kb on + strand, within BT0171 at 179.572 kb on - strand, within BT0171 at 179.650 kb on + strand, within BT0171 at 179.710 kb on + strand, within BT0171 at 179.720 kb on + strand, within BT0171 at 179.740 kb on + strand, within BT0171 at 179.760 kb on + strand, within BT0171 at 179.763 kb on + strand, within BT0171 at 179.790 kb on + strand, within BT0171 at 179.864 kb on - strand, within BT0171 at 179.932 kb on + strand, within BT0171 at 179.932 kb on + strand, within BT0171 at 179.956 kb on + strand, within BT0171 at 179.961 kb on - strand, within BT0171 at 180.022 kb on + strand, within BT0171 at 180.022 kb on + strand, within BT0171 at 180.109 kb on - strand, within BT0171 at 180.154 kb on - strand, within BT0171 at 180.180 kb on - strand, within BT0171 at 180.250 kb on + strand, within BT0171 at 180.265 kb on - strand at 180.308 kb on - strand at 180.485 kb on - strand at 180.547 kb on - strand at 180.560 kb on - strand, within BT0172 at 180.623 kb on + strand, within BT0172 at 180.624 kb on - strand, within BT0172 at 180.643 kb on - strand, within BT0172 at 180.695 kb on - strand, within BT0172 at 180.698 kb on - strand, within BT0172 at 180.727 kb on + strand, within BT0172 at 180.727 kb on + strand, within BT0172 at 180.728 kb on - strand, within BT0172 at 180.731 kb on + strand, within BT0172 at 180.731 kb on + strand, within BT0172 at 180.731 kb on + strand, within BT0172 at 180.732 kb on - strand, within BT0172 at 180.732 kb on - strand, within BT0172 at 180.732 kb on - strand, within BT0172 at 180.749 kb on + strand, within BT0172 at 180.788 kb on - strand, within BT0172 at 180.838 kb on + strand, within BT0172 at 180.858 kb on + strand, within BT0172 at 180.859 kb on - strand, within BT0172 at 180.877 kb on - strand at 180.935 kb on + strand at 180.990 kb on + strand at 180.998 kb on + strand at 181.018 kb on - strand at 181.035 kb on - strand at 181.053 kb on + strand at 181.055 kb on + strand at 181.057 kb on + strand at 181.096 kb on - strand at 181.104 kb on + strand at 181.122 kb on + strand at 181.141 kb on - strand at 181.147 kb on - strand at 181.151 kb on + strand at 181.152 kb on - strand at 181.153 kb on + strand at 181.153 kb on + strand at 181.154 kb on - strand at 181.154 kb on - strand at 181.260 kb on - strand at 181.346 kb on + strand at 181.346 kb on + strand at 181.484 kb on - strand at 181.501 kb on + strand at 181.519 kb on + strand at 181.536 kb on - strand at 181.536 kb on - strand at 181.565 kb on + strand at 181.566 kb on - strand at 181.621 kb on - strand at 181.655 kb on + strand at 181.713 kb on + strand at 181.768 kb on - strand at 181.787 kb on + strand at 181.790 kb on - strand at 181.790 kb on - strand at 181.790 kb on - strand at 181.795 kb on + strand at 181.818 kb on + strand at 181.827 kb on + strand at 181.828 kb on - strand at 181.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Chloride 350 mM remove 179,550 + BT0171 0.35 +1.5 179,552 + BT0171 0.35 -1.1 179,572 - BT0171 0.36 -2.5 179,650 + BT0171 0.42 -0.1 179,710 + BT0171 0.47 -2.2 179,720 + BT0171 0.48 -2.1 179,740 + BT0171 0.49 +0.3 179,760 + BT0171 0.51 +0.8 179,763 + BT0171 0.51 -0.5 179,790 + BT0171 0.53 +0.0 179,864 - BT0171 0.59 -1.5 179,932 + BT0171 0.64 -1.6 179,932 + BT0171 0.64 +0.2 179,956 + BT0171 0.66 -0.2 179,961 - BT0171 0.67 +0.9 180,022 + BT0171 0.71 +0.3 180,022 + BT0171 0.71 -1.0 180,109 - BT0171 0.78 -0.6 180,154 - BT0171 0.82 -2.0 180,180 - BT0171 0.84 -0.2 180,250 + BT0171 0.89 -0.7 180,265 - +0.2 180,308 - +0.8 180,485 - -0.3 180,547 - -0.1 180,560 - BT0172 0.14 +0.5 180,623 + BT0172 0.30 +1.5 180,624 - BT0172 0.30 -0.1 180,643 - BT0172 0.35 +0.5 180,695 - BT0172 0.48 -2.1 180,698 - BT0172 0.49 +0.6 180,727 + BT0172 0.56 -0.9 180,727 + BT0172 0.56 +1.7 180,728 - BT0172 0.56 +2.5 180,731 + BT0172 0.57 +1.6 180,731 + BT0172 0.57 -1.3 180,731 + BT0172 0.57 -0.1 180,732 - BT0172 0.57 -0.1 180,732 - BT0172 0.57 -0.5 180,732 - BT0172 0.57 -2.7 180,749 + BT0172 0.62 -0.8 180,788 - BT0172 0.71 -2.1 180,838 + BT0172 0.84 -1.2 180,858 + BT0172 0.89 -0.4 180,859 - BT0172 0.89 +1.3 180,877 - +0.7 180,935 + -0.7 180,990 + -0.1 180,998 + -2.0 181,018 - -0.9 181,035 - +0.5 181,053 + +1.0 181,055 + +0.1 181,057 + +0.9 181,096 - -2.5 181,104 + -0.2 181,122 + +1.5 181,141 - -0.2 181,147 - -1.1 181,151 + +1.5 181,152 - -2.6 181,153 + +3.5 181,153 + -0.9 181,154 - -1.7 181,154 - -1.3 181,260 - -0.9 181,346 + +0.9 181,346 + -0.3 181,484 - -0.4 181,501 + -1.1 181,519 + -1.5 181,536 - +1.4 181,536 - -0.1 181,565 + -0.3 181,566 - -0.6 181,621 - +0.7 181,655 + +0.3 181,713 + +0.4 181,768 - -2.5 181,787 + +0.4 181,790 - -2.0 181,790 - -2.4 181,790 - -1.0 181,795 + -0.7 181,818 + +0.5 181,827 + +1.0 181,828 - -0.4 181,895 - -1.3
Or see this region's nucleotide sequence