Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_277

Experiment: Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_275 and Pf6N2E2_276 are separated by 72 nucleotidesPf6N2E2_276 and Pf6N2E2_277 are separated by 10 nucleotidesPf6N2E2_277 and Pf6N2E2_278 are separated by 871 nucleotides Pf6N2E2_275 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 340,017 to 341,801 _275 Pf6N2E2_276 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 341,874 to 342,548 _276 Pf6N2E2_277 - NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3), at 342,559 to 342,972 _277 Pf6N2E2_278 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 343,844 to 345,766 _278 Position (kb) 342 343Strain fitness (log2 ratio) -2 -1 0 1 2at 341.828 kb on - strandat 343.016 kb on - strandat 343.036 kb on - strandat 343.106 kb on - strandat 343.118 kb on - strandat 343.125 kb on + strandat 343.126 kb on - strandat 343.189 kb on - strandat 343.189 kb on - strandat 343.269 kb on + strandat 343.269 kb on + strandat 343.269 kb on + strandat 343.269 kb on + strandat 343.270 kb on - strandat 343.270 kb on - strandat 343.294 kb on + strandat 343.294 kb on + strandat 343.294 kb on + strandat 343.294 kb on + strandat 343.332 kb on + strandat 343.354 kb on + strandat 343.549 kb on + strandat 343.550 kb on - strandat 343.556 kb on + strandat 343.556 kb on + strandat 343.556 kb on + strandat 343.556 kb on + strandat 343.556 kb on + strandat 343.557 kb on - strandat 343.557 kb on - strandat 343.634 kb on + strandat 343.634 kb on + strandat 343.635 kb on - strandat 343.701 kb on - strandat 343.701 kb on - strandat 343.752 kb on - strandat 343.752 kb on - strandat 343.759 kb on + strandat 343.759 kb on + strandat 343.775 kb on - strandat 343.792 kb on + strandat 343.792 kb on + strandat 343.792 kb on + strandat 343.792 kb on + strandat 343.792 kb on + strandat 343.793 kb on - strandat 343.793 kb on - strandat 343.793 kb on - strandat 343.793 kb on - strandat 343.793 kb on - strandat 343.793 kb on - strandat 343.793 kb on - strandat 343.793 kb on - strandat 343.793 kb on - strandat 343.793 kb on - strandat 343.793 kb on - strandat 343.796 kb on + strandat 343.796 kb on + strandat 343.797 kb on - strandat 343.797 kb on - strandat 343.797 kb on - strandat 343.797 kb on - strandat 343.797 kb on - strandat 343.829 kb on + strandat 343.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.008 mg/ml
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341,828 - +0.9
343,016 - +1.3
343,036 - +0.7
343,106 - +0.9
343,118 - +2.0
343,125 + +1.0
343,126 - -0.6
343,189 - -2.3
343,189 - -0.8
343,269 + +1.2
343,269 + +1.0
343,269 + -0.2
343,269 + +0.9
343,270 - +0.2
343,270 - +0.3
343,294 + +0.8
343,294 + +0.1
343,294 + +0.6
343,294 + +0.2
343,332 + -0.5
343,354 + +0.8
343,549 + -0.1
343,550 - +0.5
343,556 + +0.4
343,556 + +1.1
343,556 + +1.7
343,556 + +1.0
343,556 + +0.6
343,557 - +0.4
343,557 - +0.7
343,634 + +0.9
343,634 + +0.9
343,635 - -0.1
343,701 - -0.3
343,701 - -0.1
343,752 - +0.1
343,752 - +0.5
343,759 + -0.2
343,759 + -0.2
343,775 - -0.4
343,792 + +0.7
343,792 + +0.3
343,792 + +0.5
343,792 + +0.3
343,792 + -0.1
343,793 - -0.4
343,793 - -0.3
343,793 - -0.8
343,793 - +1.8
343,793 - +0.1
343,793 - +0.2
343,793 - +0.3
343,793 - -0.6
343,793 - -0.1
343,793 - +0.9
343,793 - -0.4
343,796 + +0.1
343,796 + -0.2
343,797 - +0.8
343,797 - +0.7
343,797 - +0.3
343,797 - -0.5
343,797 - -0.7
343,829 + +1.0
343,830 - -1.1

Or see this region's nucleotide sequence