Experiment: Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1033 and Pf6N2E2_1034 are separated by 46 nucleotides Pf6N2E2_1034 and Pf6N2E2_1035 are separated by 84 nucleotides Pf6N2E2_1035 and Pf6N2E2_1036 are separated by 1 nucleotides
Pf6N2E2_1033 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,207,062 to 1,208,087
_1033
Pf6N2E2_1034 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,208,134 to 1,208,943
_1034
Pf6N2E2_1035 - MotA/TolQ/ExbB proton channel family protein, at 1,209,028 to 1,209,753
_1035
Pf6N2E2_1036 - Biopolymer transport protein ExbD/TolR, at 1,209,755 to 1,210,156
_1036
Position (kb)
1208
1209 Strain fitness (log2 ratio)
-2
-1
0
1 at 1207.263 kb on + strand, within Pf6N2E2_1033 at 1207.264 kb on - strand, within Pf6N2E2_1033 at 1207.264 kb on - strand, within Pf6N2E2_1033 at 1207.528 kb on - strand, within Pf6N2E2_1033 at 1207.846 kb on - strand, within Pf6N2E2_1033 at 1207.927 kb on + strand, within Pf6N2E2_1033 at 1208.119 kb on + strand at 1208.120 kb on - strand at 1208.120 kb on - strand at 1208.395 kb on - strand, within Pf6N2E2_1034 at 1208.689 kb on + strand, within Pf6N2E2_1034 at 1208.942 kb on - strand at 1209.587 kb on - strand, within Pf6N2E2_1035 at 1209.592 kb on + strand, within Pf6N2E2_1035 at 1209.592 kb on + strand, within Pf6N2E2_1035 at 1209.592 kb on + strand, within Pf6N2E2_1035 at 1209.592 kb on + strand, within Pf6N2E2_1035 at 1209.593 kb on - strand, within Pf6N2E2_1035 at 1209.653 kb on - strand, within Pf6N2E2_1035 at 1209.653 kb on - strand, within Pf6N2E2_1035 at 1209.823 kb on + strand, within Pf6N2E2_1036 at 1209.823 kb on + strand, within Pf6N2E2_1036 at 1209.823 kb on + strand, within Pf6N2E2_1036 at 1209.823 kb on + strand, within Pf6N2E2_1036 at 1209.824 kb on - strand, within Pf6N2E2_1036 at 1209.824 kb on - strand, within Pf6N2E2_1036
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.008 mg/ml remove 1,207,263 + Pf6N2E2_1033 0.20 -0.7 1,207,264 - Pf6N2E2_1033 0.20 -0.3 1,207,264 - Pf6N2E2_1033 0.20 -0.1 1,207,528 - Pf6N2E2_1033 0.45 -1.3 1,207,846 - Pf6N2E2_1033 0.76 -1.4 1,207,927 + Pf6N2E2_1033 0.84 +0.9 1,208,119 + -0.3 1,208,120 - +0.4 1,208,120 - +0.3 1,208,395 - Pf6N2E2_1034 0.32 -0.4 1,208,689 + Pf6N2E2_1034 0.69 -1.3 1,208,942 - -2.3 1,209,587 - Pf6N2E2_1035 0.77 +0.5 1,209,592 + Pf6N2E2_1035 0.78 -0.3 1,209,592 + Pf6N2E2_1035 0.78 +0.2 1,209,592 + Pf6N2E2_1035 0.78 -1.1 1,209,592 + Pf6N2E2_1035 0.78 +0.6 1,209,593 - Pf6N2E2_1035 0.78 -0.8 1,209,653 - Pf6N2E2_1035 0.86 +0.7 1,209,653 - Pf6N2E2_1035 0.86 -0.0 1,209,823 + Pf6N2E2_1036 0.17 +0.9 1,209,823 + Pf6N2E2_1036 0.17 +0.7 1,209,823 + Pf6N2E2_1036 0.17 +0.7 1,209,823 + Pf6N2E2_1036 0.17 -0.1 1,209,824 - Pf6N2E2_1036 0.17 +0.1 1,209,824 - Pf6N2E2_1036 0.17 +1.2
Or see this region's nucleotide sequence