Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07590 and MMP_RS07595 are separated by 92 nucleotides MMP_RS07595 and MMP_RS07600 are separated by 116 nucleotides MMP_RS07600 and MMP_RS07605 are separated by 21 nucleotides
MMP_RS07590: MMP_RS07590 - hypothetical protein, at 1,436,584 to 1,437,417
_RS07590
MMP_RS07595: MMP_RS07595 - hypothetical protein, at 1,437,510 to 1,438,247
_RS07595
MMP_RS07600: MMP_RS07600 - Ni-sirohydrochlorin a c-diamide synthase, at 1,438,364 to 1,439,708
_RS07600
MMP_RS07605: MMP_RS07605 - diadenylate cyclase, at 1,439,730 to 1,440,662
_RS07605
Position (kb) 1438
1439
1440 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1437.370 kb on - strand at 1437.371 kb on + strand at 1437.394 kb on - strand at 1437.411 kb on - strand at 1437.418 kb on + strand at 1437.434 kb on + strand at 1437.479 kb on + strand at 1437.479 kb on + strand at 1437.481 kb on + strand at 1437.516 kb on - strand at 1437.516 kb on - strand at 1437.528 kb on - strand at 1437.538 kb on - strand at 1437.542 kb on + strand at 1437.542 kb on + strand at 1437.590 kb on + strand, within MMP_RS07595 at 1437.590 kb on + strand, within MMP_RS07595 at 1437.594 kb on + strand, within MMP_RS07595 at 1437.594 kb on + strand, within MMP_RS07595 at 1437.597 kb on - strand, within MMP_RS07595 at 1437.676 kb on + strand, within MMP_RS07595 at 1437.807 kb on - strand, within MMP_RS07595 at 1437.926 kb on - strand, within MMP_RS07595 at 1437.935 kb on - strand, within MMP_RS07595 at 1437.937 kb on - strand, within MMP_RS07595 at 1437.944 kb on + strand, within MMP_RS07595 at 1437.971 kb on - strand, within MMP_RS07595 at 1437.975 kb on - strand, within MMP_RS07595 at 1437.976 kb on + strand, within MMP_RS07595 at 1437.976 kb on + strand, within MMP_RS07595 at 1437.997 kb on + strand, within MMP_RS07595 at 1438.010 kb on + strand, within MMP_RS07595 at 1438.127 kb on - strand, within MMP_RS07595 at 1438.137 kb on - strand, within MMP_RS07595 at 1438.296 kb on - strand at 1438.297 kb on + strand at 1438.340 kb on - strand at 1439.154 kb on - strand, within MMP_RS07600 at 1439.180 kb on + strand, within MMP_RS07600 at 1439.487 kb on + strand, within MMP_RS07600 at 1439.545 kb on - strand, within MMP_RS07600 at 1439.574 kb on + strand at 1439.601 kb on + strand at 1439.638 kb on - strand at 1439.639 kb on + strand at 1439.733 kb on + strand at 1439.987 kb on - strand, within MMP_RS07605 at 1439.988 kb on + strand, within MMP_RS07605 at 1440.123 kb on + strand, within MMP_RS07605 at 1440.160 kb on + strand, within MMP_RS07605 at 1440.692 kb on - strand at 1440.693 kb on + strand at 1440.704 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE remove 1,437,370 - +0.6 1,437,371 + -0.9 1,437,394 - +0.9 1,437,411 - +0.5 1,437,418 + +1.7 1,437,434 + +2.0 1,437,479 + +1.5 1,437,479 + +0.3 1,437,481 + +0.8 1,437,516 - -0.4 1,437,516 - +1.0 1,437,528 - +0.9 1,437,538 - -0.0 1,437,542 + +0.5 1,437,542 + +1.5 1,437,590 + MMP_RS07595 0.11 +0.4 1,437,590 + MMP_RS07595 0.11 +0.7 1,437,594 + MMP_RS07595 0.11 +0.7 1,437,594 + MMP_RS07595 0.11 +0.2 1,437,597 - MMP_RS07595 0.12 +0.3 1,437,676 + MMP_RS07595 0.22 +0.6 1,437,807 - MMP_RS07595 0.40 -0.2 1,437,926 - MMP_RS07595 0.56 +0.2 1,437,935 - MMP_RS07595 0.58 +1.8 1,437,937 - MMP_RS07595 0.58 +0.1 1,437,944 + MMP_RS07595 0.59 +0.1 1,437,971 - MMP_RS07595 0.62 +0.4 1,437,975 - MMP_RS07595 0.63 -0.2 1,437,976 + MMP_RS07595 0.63 +0.2 1,437,976 + MMP_RS07595 0.63 +0.5 1,437,997 + MMP_RS07595 0.66 +0.3 1,438,010 + MMP_RS07595 0.68 +0.6 1,438,127 - MMP_RS07595 0.84 +0.5 1,438,137 - MMP_RS07595 0.85 +0.1 1,438,296 - +0.2 1,438,297 + +0.4 1,438,340 - -2.7 1,439,154 - MMP_RS07600 0.59 -3.1 1,439,180 + MMP_RS07600 0.61 -3.7 1,439,487 + MMP_RS07600 0.83 -3.4 1,439,545 - MMP_RS07600 0.88 -3.0 1,439,574 + -2.4 1,439,601 + -4.6 1,439,638 - -4.5 1,439,639 + -0.7 1,439,733 + -3.6 1,439,987 - MMP_RS07605 0.28 -4.3 1,439,988 + MMP_RS07605 0.28 -4.5 1,440,123 + MMP_RS07605 0.42 -4.3 1,440,160 + MMP_RS07605 0.46 -5.1 1,440,692 - -0.5 1,440,693 + +0.7 1,440,704 + +0.3
Or see this region's nucleotide sequence